Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_H04
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    42   9e-05
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    28   1.5  
SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr 3|||M...    27   2.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   6.1  

>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
 Frame = +2

Query: 215 EFAVVIYRHGDRTPVNPYPTDPWKNESLWPVNF-GQLTNIGKKRHYQLGQWFRKRY---- 379
           E++V+ +     +PV+     P  + S   V   G+LT+ G+     LG++ R+RY    
Sbjct: 72  EWSVLGFERKVESPVDTSLAAPTSDNSPSGVCIHGELTDFGRVTTRTLGEYLRERYVKQL 131

Query: 380 SHLISKQYNPQEIYVRSTDVDRTLMSAQANLAGMYPPNGTSVWNPDLMWQPIPVHTVPEH 559
             L  +  N  ++Y+R+T + R L S +   +G+YP +         M  P+ + T    
Sbjct: 132 KFLPDELNNYADVYMRATPMVRALESLEHVFSGLYPESKRK------MGLPV-IFTRNWS 184

Query: 560 DDNILAMKKSCP 595
           D+N+L  + +CP
Sbjct: 185 DENLLPNENNCP 196


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
 Frame = +2

Query: 254 PVN-PYPTDPWKNESLW-PV----NFGQLTNIGKKRHYQLGQWFRKRYSHLISKQYNPQE 415
           PVN  YP +P      W PV    N  QL++ G+   + LG+   +RY  L        +
Sbjct: 102 PVNFSYPENPLYFVKHWTPVIKAENADQLSSSGRIELFDLGRQVFERYYELFDT-----D 156

Query: 416 IY-VRSTDVDRTLMSAQANLAGMYPPNGTSVWNPDLMWQPIPVHTVPEHDD---NILAMK 583
           +Y + +   +R + SA+    GM+          D M        +PE D    N LAM 
Sbjct: 157 VYDINTAAQERVVDSAEWFSYGMFG---------DDMQNKTNFIVLPEDDSAGANSLAMY 207

Query: 584 KSCPAYDKEHL 616
            SCP Y+  ++
Sbjct: 208 YSCPVYEDNNI 218


>SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 576 ARMLSSCSGTVCTGIGCHIKSGFHTLVPFGGYIPAKLA*ADIRVRSTSVDLTYISCGLYC 397
           A +L++ SG    G+   +     +  P   +I      A+ RV S +VDL+ +  G+Y 
Sbjct: 15  AHILNTMSGIPAAGVQVALFKLNESPTPSQQFIATTETNANGRVTSWNVDLSTVESGIYT 74

Query: 396 FEIK 385
           F  +
Sbjct: 75  FRFE 78


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 682 IFEHWHQN*ELCRYFGYLHHFV 747
           ++E    N  LCRY+G L HF+
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFL 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,816,917
Number of Sequences: 5004
Number of extensions: 87797
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)