Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_H04
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224... 38 0.014
11_06_0035 - 19470616-19470797,19471561-19471686,19471813-194718... 32 0.53
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 30 2.1
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 3.7
08_02_0082 + 12059692-12060209,12060484-12060973 29 4.9
06_03_1265 + 28847782-28849803 28 8.6
>03_06_0463 +
34121421-34121560,34121728-34121812,34122129-34122428,
34123194-34123352,34123852-34123992,34124078-34124134,
34124534-34124672,34124954-34125058,34125159-34125376,
34125980-34126021,34126136-34126309
Length = 519
Score = 37.5 bits (83), Expect = 0.014
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +2
Query: 278 PWKNESLWPVNFGQLTNIGKKRHYQLGQWFRKRYSHLISKQYNPQEIYVRSTDVDRTLMS 457
PWK V G+L + G++ Y L ++R+ L ++Y+P +R+T V R S
Sbjct: 127 PWKGR----VKGGELVSEGEEELYNLAIRVKERFQGLFDEEYHPDVYSIRATQVPRASAS 182
Query: 458 AQANLAGMYPPNG 496
A A G+ G
Sbjct: 183 AVAFGLGLLSGKG 195
>11_06_0035 -
19470616-19470797,19471561-19471686,19471813-19471861,
19471986-19472123
Length = 164
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 656 YGVYSGIPLNGCISDAPYHRLDRTFSLQECCHHVQEL-YVQVLAATSNLD 510
YG Y G+ GC +AP LD L + C + Y+ +L S LD
Sbjct: 69 YGKYCGVSYTGCPGEAPCDALDACCMLHDACVQATDNDYLNMLCNQSLLD 118
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 485 PPNGTSVWNPDLMWQPIPVHTVPEHDDNILAMKKSCPAYDKEHLK 619
P G +W +M + P HD++ L + C + KEHLK
Sbjct: 254 PSVGLKIWIFYIMVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLK 298
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/110 (20%), Positives = 47/110 (42%)
Frame = +2
Query: 410 QEIYVRSTDVDRTLMSAQANLAGMYPPNGTSVWNPDLMWQPIPVHTVPEHDDNILAMKKS 589
+E + D+DR S + +Y + +S W+ D W+ + +P I +K
Sbjct: 283 KETFATGGDLDRVKKSVELESLALYFDSDSSPWSVDKSWEDL----LPSEWSQIFEFRKQ 338
Query: 590 CPAYDKEHLKYTHSVEYLNKLHKYDELMHYLSSNTGTKIKSFADILDIYT 739
+ + +T+ + ++ KY ++ + TG +++ A LD T
Sbjct: 339 -DSSNPPSKTHTYILRPISGKAKYTKIQLDEAKKTGQALQNAAVDLDDVT 387
>08_02_0082 + 12059692-12060209,12060484-12060973
Length = 335
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 452 MSAQANLAGMY-PPNGTSVWNPDLMWQPIPVHTVPEHDDNILAM 580
MS A LAG+ G +N + +PV + EHDD I AM
Sbjct: 1 MSTTAKLAGLLRDEQGPVAFNDAVDEDAVPVEPLTEHDDAISAM 44
>06_03_1265 + 28847782-28849803
Length = 673
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 638 YLNKLHKYDELMHYLSSNTGTKIKSFADILD 730
YL L + +E +H+LS N G + ADI++
Sbjct: 110 YLAVLSRLEEALHFLSDNCGIASQWLADIVE 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,706,025
Number of Sequences: 37544
Number of extensions: 559419
Number of successful extensions: 1293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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