Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_H02
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.044
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.41
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.41
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 8.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXPPSPLAXXXPAPXX---VIXLXXXPPPPP 937
PP PPP P+ PAP P PP+P+ P P V PPPPP
Sbjct: 732 PPPPPPAVIVPT-PAPAPIPVP--PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = +2
Query: 830 APRXXPXXXXPPSPLAXXXPAPXXVIXLXXXPPPPP 937
+P P P+P P P + PPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/69 (26%), Positives = 20/69 (28%)
Frame = +2
Query: 689 APPPPXXPKXXKXXGPXXGXXXXPTXXIXXXXXPPXPPPXXRPPSXPAPRXXPXXXXPPS 868
+PPPP P P P PP PPP + P P P
Sbjct: 731 SPPPP--PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Query: 869 PLAXXXPAP 895
PAP
Sbjct: 789 GSRYYAPAP 797
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.044
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Frame = +2
Query: 692 PPPPXXPKXXKXXGPXXGXXXXPTXXIXXXXXPPXPPPXXRPPSXPA--PRXXPXXXXPP 865
PP P P P P+ + PP PP P PA P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 866 SPLAXXXPAP 895
+P PAP
Sbjct: 475 APPPAPAPAP 484
Score = 31.5 bits (68), Expect = 0.18
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 13/95 (13%)
Frame = +2
Query: 692 PPPPXXPKXXKXXGPXXGXXXXPTXXIXXXXXP--------PXPPPXXRPPSXPAPRXXP 847
PPPP P P G + P P PP P P PR P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 848 XXXXPPSPLA-----XXXPAPXXVIXLXXXPPPPP 937
P PL+ PAP I P PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 29.9 bits (64), Expect = 0.54
Identities = 21/83 (25%), Positives = 25/83 (30%)
Frame = +2
Query: 689 APPPPXXPKXXKXXGPXXGXXXXPTXXIXXXXXPPXPPPXXRPPSXPAPRXXPXXXXPPS 868
APPP + P T + P P PPS P PP
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449
Query: 869 PLAXXXPAPXXVIXLXXXPPPPP 937
P + AP + PP PP
Sbjct: 450 PPSAPI-APPLPAGMPAAPPLPP 471
Score = 29.9 bits (64), Expect = 0.54
Identities = 28/91 (30%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Frame = +2
Query: 695 PPPXXPKXXKXXGPXXGXXXX------PTXXIXXXXXPPXPPPXXRPPSXP--APRXXPX 850
PPP P P G PT PP PP PPS P AP P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA-PPSLPMGAPAAPPL 449
Query: 851 XXXPP--SPLAXXXPAPXXVIXLXXXPPPPP 937
P PL PA + PPP P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 28.3 bits (60), Expect = 1.6
Identities = 25/93 (26%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Frame = +2
Query: 680 SXXAPPPPXXPKXXKXXGPXXGXXXX-----PTXXIXXXXXPPXPPPXXR--PPSXPAPR 838
S APPP P P I PP PPP R + A +
Sbjct: 249 SAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANK 308
Query: 839 XXPXXXXPPSPLAXXXPAPXXVIXLXXXPPPPP 937
P PPS P PPPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/61 (24%), Positives = 17/61 (27%)
Frame = +1
Query: 751 PXPHXXNXXXXXPPXPPPXXPPPLXXRPPXXXXXXXPXFPPCGXXAGPPXGYXVXXXAPP 930
P P N PP PP P+ P P PP + PP
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314
Query: 931 P 933
P
Sbjct: 315 P 315
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +1
Query: 787 PPXPPPXXPPPLXXRPPXXXXXXXPXFPPCGXXAGP-PXGYXVXXXAPPPA 936
PP PP PP P P PP A P P G PP A
Sbjct: 424 PPSAPPSLPPSAPPSLP-MGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXP------PSPLAXXXPAPXXVIXLXXXPPP 931
PP P P PS PAP P P P P P P + + P P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
Score = 30.7 bits (66), Expect = 0.31
Identities = 23/76 (30%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Frame = +2
Query: 692 PPP---PXXPKXXKXXGPXXGXXXXPTXXIXXXXXPPXPPPXXRPPSXPAP-RXXPXXXX 859
PPP P PK P P PP P P + P PAP P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVST 1251
Query: 860 P----PSPLAXXXPAP 895
P PSP + P+P
Sbjct: 1252 PRSSVPSPHSNASPSP 1267
Score = 30.3 bits (65), Expect = 0.41
Identities = 20/77 (25%), Positives = 22/77 (28%)
Frame = +2
Query: 701 PXXPKXXKXXGPXXGXXXXPTXXIXXXXXPPXPPPXXRPPSXPAPRXXPXXXXPPSPLAX 880
P PK P P PP P P P P P PPS
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS---E 1196
Query: 881 XXPAPXXVIXLXXXPPP 931
P P + + PPP
Sbjct: 1197 APPVPKPSVGVPPVPPP 1213
Score = 29.9 bits (64), Expect = 0.54
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +2
Query: 701 PXXPKXXKXXGPXXGXXXXPTXXIXXXXXPPXPPPXXRPPSXPAPRXXPXXXXPPSPLAX 880
P PK P P PP PPP PP P P P+ A
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP-VPTPSAGLPPVPVPTAKAP 1237
Query: 881 XXPAP 895
PAP
Sbjct: 1238 PVPAP 1242
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXPPSPLAXXXPAPXXVIXLXXXPPPPP 937
PP P P P P P P P S P P PPP P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTS----TPPVPKSSSGAPSAPPPVP 1067
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXPPSPLAXXXPAP 895
PP P P P P P P PS A PAP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVPAP 1155
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXPPSPLAXXXPAP 895
PP P P P PAP P PS A P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAP-PVPKPSVAAPPVPVP 1136
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXPPSPLAXXXPAPXXVIXLXXXPPPPP 937
PP P PS P P PP P P V P P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.41
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXP 847
PP PPP PPS P P P
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 800 PPXXRPPSXPAPRXXPXXXXPPSP 871
PP PP P P P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.41
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXPPSPLAXXXPAPXXVIXLXXXPPPP 934
PP P RPP+ PR PPSP A P P + PPP
Sbjct: 130 PPTPQSELRPPTSAPPR---PSIPPPSP-ASAPPIPSKAPPIPSSLPPP 174
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Frame = +2
Query: 791 PXPPPXXRPP----SXPAPRXXPXXXXPPSPLAXXXPAPXXVIXLXXXPP--PPP 937
P P P PP + P P P P +P+ AP + PP PPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Frame = +1
Query: 787 PPXPPPXXPPPLXXRPPXXXXXXXPXF-PPCG 879
PP PP PPPL P F PP G
Sbjct: 195 PPMPPKVPPPPLSQAPVANTSSRPSSFAPPAG 226
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXX-PPSPLAXXXPAPXXVIXLXXXPPPP 934
PP P PP AP P PP P A PA PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP-----SAPPPP 1734
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +2
Query: 788 PPXPPPXXRPP--SXPAPRXXPXXXXPPSPLAXXXPAP 895
PP PP PP + P P P PP P + P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +3
Query: 756 PPXXKSTXXXXPXXPPPXXAPPXXPPP 836
PP + P PP PP PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.2
Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -2
Query: 936 GGGGGXXXNXITXXGAGXXXARG-EGGXXXXGXXRGAGXEGGRXXGGGXGG 787
GG GG G G ARG GG RG G GGR GG GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG-GSSGGR--GGAKGG 70
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -2
Query: 936 GGGGGXXXNXITXXGAGXXXARGEGGXXXXGXXRGAGXEGGRXXGGGXGG 787
GG GG G G GG G G GGR GG GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR--GGARGG 56
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = -2
Query: 933 GGGGXXXNXITXXGAGXXXARGEGGXXXXGXXRG-AGXEGGRXXG-GGXGG 787
GG G G G ARG G G G G GGR GG GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +2
Query: 797 PPPXXRPPSXPAP-RXXPXXXXPPSP 871
PPP +PPS AP P PP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPP 192
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -2
Query: 936 GGGGGXXXNXITXXGAGXXXARGEGGXXXXGXXRGAGXEGGRXXGGGXGG 787
GG GG + G G EGG G G G GGG GG
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 788 PPXPPPXXRPPSXPAPRXXPXXXXPPS 868
PP PPP P + P P P PP+
Sbjct: 1882 PPPPPPMALPKAGP-PSAAPTSALPPA 1907
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,340
Number of Sequences: 5004
Number of extensions: 19534
Number of successful extensions: 242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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