Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G23
(955 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 33 0.045
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.18
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 29 1.3
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 3.9
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 3.9
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 3.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 5.1
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 9.0
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 33.5 bits (73), Expect = 0.045
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 119 SVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIAL--NMP 292
+V N+ + + Q+ + P V+ A+P P+ATH P + + A AL P
Sbjct: 330 AVTNITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAAALAKESP 389
Query: 293 --EYQIQQVQPTSSN 331
Y +QQV+P + N
Sbjct: 390 SHHYIMQQVRPETPN 404
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.18
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +2
Query: 149 SQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 328
S HQ P + VAP++ + P P+A V + AL++P+ + V P
Sbjct: 528 SVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVP 587
Query: 329 NV----VAPLSSQSLSLPKATVTQAIRQV 403
+V VAP+ ++ S+P+ V +V
Sbjct: 588 SVPQPPVAPVVPEAPSVPQPPVAPVAPEV 616
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 479 VAANSPGALAGLRFGDQILEINNVT 553
VA SP AGL GD+++ + NVT
Sbjct: 135 VAVESPAQEAGLCIGDELVHVQNVT 159
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 158 QAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVV 337
Q PS+ APQ PS S ++V P L + + +++ P Y Q + SS+ V
Sbjct: 263 QLAPSFAAPQAHPLPSHLSQSNVPPQL-SHSSVPSPAPPRSVSQPTYFSQPMPQFSSSFV 321
Query: 338 APLSS 352
SS
Sbjct: 322 PGTSS 326
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 658 SYISLEWPITNSHGDIICRSFLKDI-MTFIHCHSSNSDIID 539
+Y++ P TN GDI S I +T IHCHSS ++D
Sbjct: 136 NYVAYNSP-TNP-GDIYLASLDTAIPVTLIHCHSSAVQVVD 174
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 317 PTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSP 496
P S +AP + SLS P+ T+ Q++ + L N + + + +G F V+A+ P
Sbjct: 298 PLQSPPLAPKTGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLP 357
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 248 MGMELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQA 391
M +S A N P Q +P ++ AP++S + ++ +AT A
Sbjct: 1012 MANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSA 1059
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 140 AQISQHQAPPSYVAPQLCATPSAPSATHV 226
A I+Q+ PS +AP + A SAPSA V
Sbjct: 1747 APINQNAYVPSNIAPAMGAMQSAPSAEAV 1775
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 155 HQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNV 334
H PPS++ P+L + S P+ + + E + LS+ + + P + V TS++V
Sbjct: 370 HDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTV--TSASV 427
Query: 335 VAPLSS 352
V L++
Sbjct: 428 VYHLAT 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,156
Number of Sequences: 5004
Number of extensions: 74191
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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