Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_G23
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   9.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   9.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 597 KLLQIISPWLFVIGHSR 647
           K +  I PW++ I H R
Sbjct: 326 KTVSCIDPWIYAINHPR 342


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 319 WLNLLYLVFGHVKRNYSLGQLHAHIF 242
           WL L + +    K +YSL    A+IF
Sbjct: 7   WLILYFSIVCQAKAHYSLRDFKANIF 32


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 361 KGLG**RCNHITTCWLNLLYLV 296
           KG+G   C  + +CW N+ Y++
Sbjct: 98  KGIGYATC--VLSCWTNIYYII 117


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 361 KGLG**RCNHITTCWLNLLYLV 296
           KG+G   C  + +CW N+ Y++
Sbjct: 151 KGIGYATC--VLSCWTNIYYII 170


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 597 KLLQIISPWLFVIGHSR 647
           K +  I PW++ I H R
Sbjct: 326 KTVSCIDPWIYAINHPR 342


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 227 YPTLGEYMGMELSQAVIALNMPEYQ---IQQVQPTSSNVVAPLSS 352
           YPT+    G+   Q  I  N P Y+   I+++    S + A + S
Sbjct: 296 YPTMTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDS 340


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 227 YPTLGEYMGMELSQAVIALNMPEYQ---IQQVQPTSSNVVAPLSS 352
           YPT+    G+   Q  I  N P Y+   I+++    S + A + S
Sbjct: 296 YPTMTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDS 340


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -1

Query: 331 ITTCWLNLLYLV 296
           + +CW+N+ Y+V
Sbjct: 68  VMSCWMNVYYIV 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,052
Number of Sequences: 438
Number of extensions: 5330
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)