Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G22
(938 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 39 9e-04
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.033
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 33 0.077
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 33 0.077
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 33 0.077
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.23
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.31
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 30 0.41
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 30 0.54
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 0.95
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 29 1.2
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 28 1.7
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 28 1.7
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 2.9
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 3.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 3.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 3.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 6.7
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 6.7
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 6.7
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 6.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 8.8
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 8.8
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 8.8
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 39.1 bits (87), Expect = 9e-04
Identities = 32/103 (31%), Positives = 59/103 (57%)
Frame = +3
Query: 192 NSTKENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLS 371
NSTKE L +T ++ I+ L T+ K+E+ K+++ K K E ++E+E
Sbjct: 1449 NSTKEEL--SSTQRKLSEIMDILNTT-KEELEKVRQNSNKSEGTSKDTEIPNEEEME--R 1503
Query: 372 SELQKYEVNLALRTETVAQQLAQKDLTIEKQAQIIEDLKQKLE 500
++ + EV L LR+ +A++L QK+ + KQ Q+++D + L+
Sbjct: 1504 KKVMQQEV-LRLRSR-IAKEL-QKNELLRKQNQVLQDQVKALQ 1543
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.9 bits (74), Expect = 0.033
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = +3
Query: 276 QEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLALRTETVAQQLAQKDLT- 452
QE AK +TF +Q + + N KKE+E +++ LA + L + LT
Sbjct: 1376 QETAKETDTFKQQVNSLNEEVENLKKEVEQANTK----NTRLAAAWNEKCENLKKSSLTR 1431
Query: 453 IEKQAQIIEDLKQKLEIQNSHNVGV-PEINIMVDSNSDSGVALDNDESTKVDEQKAELK 626
Q + + ++L +N+ N + EI + DSN + +D EQ +LK
Sbjct: 1432 FAHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLK 1490
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/83 (21%), Positives = 43/83 (51%)
Frame = +3
Query: 273 KQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLALRTETVAQQLAQKDLT 452
+ E++++KE +++ + + L+ ++ L++ + +T + L+ K+
Sbjct: 91 ENELSQIKEYLREKSSSYDTV-LHDCSSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKE 149
Query: 453 IEKQAQIIEDLKQKLEIQNSHNV 521
+EK+ II+DLK L ++H V
Sbjct: 150 VEKKITIIKDLKDAL-ASSTHQV 171
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 32.7 bits (71), Expect = 0.077
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = +3
Query: 228 LQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLAL 407
LQE + I K+ ++K + EV+ KL T ++E+E +++ E +++L
Sbjct: 537 LQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISL 596
Query: 408 ---RTETVAQQLAQKDLTIEKQAQIIEDLKQKLEIQNSHNVGVPEINIMVDSNSDSGVAL 578
E + ++ Q + ++L+++L+ N E + SN + +
Sbjct: 597 FKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKM 656
Query: 579 DNDESTKVDEQKAELKPV 632
E + ++ E K V
Sbjct: 657 TEAEVDSLRKENEENKQV 674
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 32.7 bits (71), Expect = 0.077
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +3
Query: 171 RETNMTENSTKENLLQPTTLQEAINI-IKFLKTSHKQEIAKLKETFAKQAEVIKKLETNR 347
RET E E + + T Q + I ++ K SH + + +L + K + + + ++
Sbjct: 197 RETERQEQYEVE-IQRHLTNQHQLEIELESTKASHTENLGELTRNWQKAMDDVTEKFASK 255
Query: 348 KKELEFLSSELQKYEVNLALRTETVAQQLAQKDLTIEK 461
KE E L +EL + L+ R + ++ +K L I K
Sbjct: 256 SKEYEDLQNELDATQKRLS-RVSDLEHEVKEKTLLIGK 292
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 32.7 bits (71), Expect = 0.077
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 510 SHNVGVPEINIMVDSNSDSGVALDNDESTKVDEQKAE--LKPVRKCSRRFGETISF 671
S ++ PE+N++ D N DS V N+E+ +++A +K + S F ++ +F
Sbjct: 433 SKSIDYPEMNVIKDKNKDSTVRASNNENIPTPDKQASPFVKNLSSTSSPFSQSSAF 488
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.1 bits (67), Expect = 0.23
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +3
Query: 222 TTLQEAINIIKFLKTSHKQEI----AKLKETFAKQAEVIKKLE--TNRKKELEFLSSELQ 383
T QE I+ +K S Q I +KL ET +K +++ +E N+ E+E + L
Sbjct: 951 TARQEEISNLKEENMSQSQAITSVKSKLDETLSKSSKLEADIEHLKNKVSEVEVERNALL 1010
Query: 384 KYEVNLALRTETVAQQLAQKDLTIEKQAQIIEDLKQKLEIQNS 512
L + + +A IEK+ +DL+ KL + +S
Sbjct: 1011 ASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSS 1053
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.7 bits (66), Expect = 0.31
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 294 KETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLALRTETVAQQLAQKDLTIEKQAQI 473
+E KQ +KK+ KK + +L K E E +A+Q AQK L ++Q
Sbjct: 578 EENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQ--- 634
Query: 474 IEDLKQKLEIQ 506
E+ ++K E Q
Sbjct: 635 -EEARKKREEQ 644
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 30.3 bits (65), Expect = 0.41
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = +3
Query: 270 HKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLALRTETVAQQLAQ--- 440
+KQ ++ +K FAK E + E L S+ +V L E A++L+Q
Sbjct: 143 YKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQELIKEATAKKLSQQAK 202
Query: 441 KDLTIEKQAQIIEDLKQKLEIQNSHNVGVPEINIMVDSNSDSGVALDNDESTKVDEQKAE 620
K ++K + ++ KQ+ E Q + +IN++ ++ + ++D + A+
Sbjct: 203 KQRELKKFGKQVQLAKQE-ERQREKKETLEKINLLKRKHTGGDLTTEDDFDIALSSASAD 261
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 29.9 bits (64), Expect = 0.54
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Frame = +3
Query: 243 NIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQK--YEVNLA-LRT 413
N IK LK S + KLK KQA +L+ + KE+E ELQK +E ++ L
Sbjct: 64 NTIKQLKKSLSEAETKLKRLDEKQA--TPELQVSDSKEME-EQLELQKSQFEKRISILEK 120
Query: 414 ETVAQQLAQKDLTIEKQAQI-----IEDLKQKLEIQNS 512
E Q ++LT+E + +E L + IQ S
Sbjct: 121 EKEDLQRKMEELTVESMEVVRLTRQVETLSTQYSIQRS 158
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.1 bits (62), Expect = 0.95
Identities = 19/94 (20%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 231 QEAINIIKFLKTSHKQEIA-KLKETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLAL 407
+E I + + L H+Q+ + +L+ T ++ +++ T+ +KE+E + +E + +V +
Sbjct: 80 REQIELQRKLAEEHEQKNSLQLRLTLVEKQ--LEEQSTSYQKEIEEVRNEKEATQVKIHE 137
Query: 408 RTETVAQQLAQKDLTIEKQAQIIEDLKQKLEIQN 509
+ +++A+ IEK Q + + ++ + N
Sbjct: 138 LLDAKWKEIAELKTQIEKNDQALSEKNHEVMVSN 171
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 1.2
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = +3
Query: 177 TNMTENSTKENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKK----LETN 344
TN+ E N + T L EA++ + ++ ++ LK A ++K LE
Sbjct: 474 TNLEEGMVMLNK-ENTKLSEALSNHRVTRSEMEEATEILKNNSADLKAQLEKQPQELENR 532
Query: 345 RKKELEFLSSELQKYEVNLALRTETVAQQLAQKDLTIEKQAQIIEDLKQK 494
+E+ L QK+ N A T QQ+ D + K + + DLK+K
Sbjct: 533 LLQEISILKQRNQKFLKNNA----TSIQQIQYLDEELGKTLKQLNDLKEK 578
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.7
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +3
Query: 315 AEVIKKLETNRKKELEFLSSELQKYEVNLALR-TETVAQQLAQKDLTIEKQAQIIEDLKQ 491
++ I+ + + +K L FL+ +LQ+ A+ T+ + + + DL+ + + +D
Sbjct: 133 SDAIRNINSILEKYLRFLNPDLQELSDKKAVSSTQKPIKTIGKVDLSNKSTSN--QDQVD 190
Query: 492 KLEIQNSHNVGVPEINIMVDSNSDSGVALDNDESTKVDE 608
+QNS + GV N D+G+ LDN E ++++
Sbjct: 191 NTHVQNSTD-GV---------NQDTGMILDNTEDKEINK 219
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.7
Identities = 35/142 (24%), Positives = 60/142 (42%)
Frame = +3
Query: 201 KENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSEL 380
K+N + P+T + A+N+ K + + AK+ + K+E K+L L
Sbjct: 19 KQNQIPPSTTRRAVNVNKLGRQFRYPSVGMFTPEMAKRLAALVKME----KDL------L 68
Query: 381 QKYEVNLALRTETVAQQLAQKDLTIEKQAQIIEDLKQKLEIQNSHNVGVPEINIMVDSNS 560
+ YE N+A+ + A QL+ E I D+ KL + + +G E + MVD
Sbjct: 69 RSYE-NVAMERKECANQLSYWG---EDCDDDISDISDKLGVL-LYEIGELEEH-MVDRYD 122
Query: 561 DSGVALDNDESTKVDEQKAELK 626
V+L + Q +K
Sbjct: 123 QYRVSLKTIRDIEASVQPTRVK 144
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.5 bits (58), Expect = 2.9
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 3/149 (2%)
Frame = +3
Query: 228 LQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETN---RKKELEFLSSELQKYEVN 398
L+ ++ F + +Q + K+ + KQ + +K ++N + +FL KY N
Sbjct: 485 LENQLDTSYFDDFNDEQVLDAYKDVYEKQRKAEQKAKSNGVMNGNQRQFLGFTF-KYRPN 543
Query: 399 LALRTETVAQQLAQKDLTIEKQAQIIEDLKQKLEIQNSHNVGVPEINIMVDSNSDSGVAL 578
R V + ++ L EK + KQK I SHN G I L
Sbjct: 544 A--RKPLVGRHREKRQLRKEKPEKKNNSTKQKDLITVSHNKGTTAIE-----------DL 590
Query: 579 DNDESTKVDEQKAELKPVRKCSRRFGETI 665
D D+ +K K + V + R G+ +
Sbjct: 591 DEDKRSKTKGHKTKSSRVHRLLERKGKDL 619
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 393 VNLALRTETVAQQLAQKDLTIEKQAQIIEDLKQKLEIQNSHNVGVPEINIMVDSN 557
++++ +T + + + T K+ +++EDLK KLE++ G + + D+N
Sbjct: 13 LDISSHAKTNGDFIKKMNTTDSKRLKLLEDLKGKLEVECKIRDGAETLLQVFDTN 67
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 507 NSHNVGVPEINIMVDSNSDSGVALDNDESTKVDEQKAELKPVRKC-SRRFGETI 665
+S NV + ++ D SDS + L K+ E + + ++KC S FG+ +
Sbjct: 710 SSRNVSISVPTVLQDVFSDSPLVLSRKLRGKIPENVSSSELIKKCASNPFGKDL 763
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 3.8
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +3
Query: 165 GNRETNMTENSTKENL-LQPTTLQEAINIIKFL-KTSH--KQEIAKLKETFAKQAEVIKK 332
G E N+ EN+ K+ L L +++I++ + + H Q+I ++ KQ
Sbjct: 796 GIEEANIEENAVKKRLCLLMGCDYSSVSILQIVSQIEHFVNQQIQTIRSL--KQELRHDF 853
Query: 333 LETNRKKELEFLSSELQKYEVNLALRTETVAQQLAQKDLTIEKQAQIIEDLKQK 494
++ + KKE E LS +K+ L TET LAQ++ + ++ +E+ QK
Sbjct: 854 VQFSGKKEQE-LSRSFEKF----GLGTETKHDILAQRNRNVSEKMNDLENAAQK 902
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 6.7
Identities = 29/151 (19%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Frame = +3
Query: 192 NSTKENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLS 371
+ ++E LLQ E NI+ S K +++K E + + + ++ K+++E
Sbjct: 481 SDSQEELLQLNAKLEKANIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYE 540
Query: 372 SELQKYEVNLALRT-ETVAQQLAQKDLTIEKQAQIIE-DLKQKLEIQNSHNVGVPEI-NI 542
+E+ + L+ ET+ Q + + +Q + L K ++ + + + +
Sbjct: 541 NEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTARMKLADKYPQGDNTSENIDWLKHS 600
Query: 543 MVDSNSDSGVALDNDESTK-VDEQKAELKPV 632
+ DSN+++ + + K + + A++KPV
Sbjct: 601 LRDSNTENSIPSPLTFACKEIRKLVADIKPV 631
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = +3
Query: 492 KLEIQNSHNVGVPEINIMVDSNSDSGVALDNDESTKVDEQKAELKPVRKCSRRFGETI 665
+++ +SHN VPEI I + ++ E +RK +R+ G +
Sbjct: 285 RIKSASSHNFSVPEIRIQLPGDAKENKETRTSVEITAAENAQAAVTLRKVTRQLGSLL 342
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.2 bits (55), Expect = 6.7
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +3
Query: 249 IKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQKY---EVNLALRTET 419
++ L+ + +E ++ E Q + I +E + SS++ +Y E NL T
Sbjct: 71 LRDLEKNLAEEEVRITEMLTIQRQDIA-IERRKNTNCFSESSQVDQYSVTETNLQYATN- 128
Query: 420 VAQQLAQKDLTIEKQAQIIEDLKQKLEIQNSH 515
+ L Q+ + Q EDL +KL + N+H
Sbjct: 129 IGLNLLQQLRYLRLQLSEKEDLHKKLSVDNAH 160
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 6.7
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Frame = +3
Query: 180 NMTENSTKENLLQPTTLQEAI---NIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRK 350
++ EN +++N+ + T E + + T+ E +KE + K+E +
Sbjct: 310 DIQENKSRKNVEKATAATEEMLRGHHKPVEGTTATSEKESIKEEVDLEVNGDGKVEAEER 369
Query: 351 KELEFLSSELQKYEVNLALRTETVAQQLAQKDLTIEKQAQIIEDLKQKLEIQN 509
ELE SE + E+ L+ E + +K + I++ +++ +Q+ I N
Sbjct: 370 IELESSDSEKELSELIDFLKREHPPEDTPEKRVKIKRIRTLLDTWQQEWRILN 422
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 8.8
Identities = 19/85 (22%), Positives = 37/85 (43%)
Frame = +3
Query: 168 NRETNMTENSTKENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNR 347
N N + S + LQ T I + + + K+ +KL+ +VIK+ +
Sbjct: 704 NEAYNPSSKSATIDGLQRYTSMIGNQIYEGILQNEKELRSKLEAYHINCNKVIKEFSKRQ 763
Query: 348 KKELEFLSSELQKYEVNLALRTETV 422
+ + EL + EVNL + +++
Sbjct: 764 TARYKIIEKELAQIEVNLVSQIDSL 788
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 8.8
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 162 AGNRETNMTENSTKENLLQPTTLQ-EAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLE 338
+ + S +E+ + LQ + +N L+ S K E KLK + E KK E
Sbjct: 497 SSREQLQYVSKSNQEHKKEVEALQLQLVNSSTELE-SVKSENEKLKNELVLEIEKRKKYE 555
Query: 339 TNRKKELEFLSSELQKY 389
TN K + ++++L +Y
Sbjct: 556 TNEAK-ITTVATDLSQY 571
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 610 CSSTFVLSSLSKATPESELESTI 542
CSST LSSLS+ T + L++++
Sbjct: 275 CSSTDTLSSLSRLTSQDPLKASL 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,743
Number of Sequences: 5004
Number of extensions: 47555
Number of successful extensions: 173
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -