Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_G21
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.29 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.51 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
 Frame = -3

Query: 629 APXXGGXXPPPPPXXXXXXFFLGXXGGAPXKXPPXP----XGGGXFFXGXXPPPPPP 471
           AP  GG  PPPPP         G  G  P   PP P     GG  ++       P P
Sbjct: 755 APIMGGPPPPPPPP--------GVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 252 GXPPPXXXPPXGGGXGPP 305
           G PPP   PP   G GPP
Sbjct: 759 GGPPPPPPPPGVAGAGPP 776



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +2

Query: 509 PPPPXGXGXFFXXPPXXPPKKXPXPXXXGGGGXXXPP 619
           PPPP   G     PP  PP   P P    GG     P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 332 PPPXXFFFXGGXXPPPXGGXXXXGGXPPP 246
           PPP      GG  PPP        G PPP
Sbjct: 752 PPPAPIM--GGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 532 PPXPXGGGXFFXGKXPPPPPXXGXKKKKK 446
           PP P     F     PPPPP  G  KK+K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 532 PPXPXGGGXFFXGKXPPPPPXXGXKKKKKK 443
           PP P   G     + PPPPP    KK+K K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 545 PXKXPPXPXGGGXFFXGXXPPPPPP 471
           P   PP P   G       PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 872 GGXKXGGXGGFXGGDXXGF 816
           GG + G  GGF GG   GF
Sbjct: 172 GGSRGGSRGGFRGGSRGGF 190


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
 Frame = -3

Query: 605 PPPPPXXXXXXFFLGXXGGAPXKXPPX--------PXGGGXFFXGXXPPPPPP 471
           P PPP        L      P   PP         P G G       PPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 22.6 bits (46), Expect(2) = 9.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 497 GXXPPPPPP 471
           G  PPPPPP
Sbjct: 353 GSRPPPPPP 361



 Score = 21.0 bits (42), Expect(2) = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 626 PXXGGXXPPPPP 591
           P   G  PPPPP
Sbjct: 349 PQVQGSRPPPPP 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.154    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,435
Number of Sequences: 5004
Number of extensions: 30191
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)