Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_G21
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.44 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect(2) = 0.44
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -3

Query: 659  GXPXXGGKXXAPXXGGXXPPPPP 591
            G    G     P  G   PPPPP
Sbjct: 1841 GRRSVGSARNIPVSGSPEPPPPP 1863



 Score = 21.0 bits (42), Expect(2) = 0.44
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 488  PPPPPP 471
            PPPPPP
Sbjct: 1859 PPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 231 PXKKXGGGXPPPXXXPPXGGGXGPP 305
           P     G  P P   PP GG  G P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 9/28 (32%)
 Frame = +1

Query: 259 PPXXXXPPXGGGXXPPXKKKXXGGGXPP 342
           P     PP  G   PP        G PP
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPP 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.154    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,060
Number of Sequences: 438
Number of extensions: 7232
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)