Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_G20
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    37   0.003
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    33   0.040
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     31   0.28 
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    29   1.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   1.5  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    28   2.0  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   8.1  

>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 400 IALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYXXXKLXXKAIXNXIDXXXVRRXXXFI 579
           I  G  +L       +V  A+D GYR IDTA +Y    +  KAI +  +   V+R   F+
Sbjct: 22  IGFGAFMLKYNECYGLVTQALDSGYRHIDTAAVYGNEDICGKAIVDWCEKNNVKRTDIFL 81


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +1

Query: 376 ATGHSCRVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIY 501
           A G     + LGT    P  T   V+TA+  GYR ID A IY
Sbjct: 19  ADGSKIPGLGLGTWRSEPNQTKNAVKTALQYGYRHIDAAAIY 60


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = -3

Query: 334 LASFSSAILVLYCSSVRSPVSRFCLPLSKRRCPLPGDSILTEVIFLNTKKHNMNQIIF 161
           ++SFS+ + +LY +  +S VS   +PL +    L G S+LT +I++  K+    Q ++
Sbjct: 49  ISSFSTHLNILYFNLSKSMVSFAQVPL-EEYLNLLGHSLLTSIIYVMLKRRFYEQSVY 105


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 400 IALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYXXXK 513
           I LGT       T   V  A+  GYR IDTA+IY   K
Sbjct: 26  IGLGTWRSGKDETKNAVCAALKAGYRHIDTAHIYGNEK 63


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 391 MNVPSRSFKVAT-SFTLPFSLASFSSAILVLYCSSVRSPVSRFCL 260
           MN+    F + T ++TLPF + + + A++V      +S V+  CL
Sbjct: 726 MNISEGDFLIRTQAYTLPFLVLTKNKALIVRIAELSQSDVATLCL 770


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -3

Query: 346 LPFSLASFSSAILVLYCSSVRSPVSRFCLPLSKRRCPLPGDSILTEVIFLNTKKHNMNQI 167
           +P S  S  +  L+    +V S   +  L    + CP   D  L+ +I+L+   H+ +  
Sbjct: 58  IPLSPTSLKNPCLIFSAKNVPSISIQAYLTRILKYCPATNDVFLSVLIYLDRIVHHFHFT 117

Query: 166 IFI 158
           +FI
Sbjct: 118 VFI 120


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 385 VPSRSFKVATSFTLPFSLASFSSAILV 305
           +PS+ F++ T F  PF+   FS +++V
Sbjct: 177 LPSQRFEIVTGFLSPFNKLYFSKSLIV 203


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 352 FTLPFSLASFSSAILVLYCSSVRSPVSRFCLPLSKRRCPLPGDSILTE 209
           F+ P++LA  S    +L     + P +  CL L   R   P D++ ++
Sbjct: 301 FSPPWNLAFASMLSQLLKWDPAKRPTAEMCLDLEFCRVSAPADAVASK 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,461
Number of Sequences: 5004
Number of extensions: 39758
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)