Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G20
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0085 - 22265143-22265226,22265294-22265602,22266915-222671... 36 0.043
01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119... 33 0.30
04_01_0350 - 4610444-4610668,4612181-4612969 33 0.40
01_06_1336 + 36396904-36397014,36397141-36397191,36397681-363977... 33 0.40
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 31 1.6
10_01_0066 + 848523-849269,849520-849741 30 2.8
10_01_0065 + 845447-846187,846969-847193 30 2.8
02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122... 30 2.8
09_02_0012 + 2965797-2966714,2966756-2967011,2967051-2967147,296... 29 3.7
10_01_0070 + 902999-903354,904354-904600,904718-904897,905087-90... 28 8.5
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 28 8.5
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 28 8.5
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 28 8.5
>05_05_0085 -
22265143-22265226,22265294-22265602,22266915-22267187,
22267413-22267500,22267620-22267696,22267791-22267841,
22267967-22268077
Length = 330
Score = 35.9 bits (79), Expect = 0.043
Identities = 22/67 (32%), Positives = 27/67 (40%)
Frame = +1
Query: 379 TGHSCRVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYXXXKLXXKAIXNXIDXXXV 558
TG + LGT P + V A+ GYR ID A Y K A+ D V
Sbjct: 9 TGAKIPSVGLGTWQAEPGVVGNAVYAAVKAGYRHIDCAQAYFNEKEIGVALKKVFDEGIV 68
Query: 559 RRXXXFI 579
+R FI
Sbjct: 69 KREDIFI 75
>01_06_1338 +
36411536-36411646,36411738-36411791,36411898-36411974,
36412108-36412195,36412289-36412561,36412651-36412968
Length = 306
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 379 TGHSCRVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIY-XXXKLXXKAIXNXIDXXX 555
TG + LGT + ++V A+ GYR ID A +Y ++ A+ D
Sbjct: 9 TGARIPSVGLGTYKAGTGVVADVVSAAVKAGYRHIDCAPLYKNEQEVIGGALKKLFDDGV 68
Query: 556 VRRXXXFIXGXI 591
V+R FI I
Sbjct: 69 VKREDLFITSKI 80
>04_01_0350 - 4610444-4610668,4612181-4612969
Length = 337
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 TGHSCRVIALGT-ALLPPRLTTEIVETAIDMGYRAIDTAYIY 501
+GH+ V+ GT + PP + A+ +GYR +DTA +Y
Sbjct: 27 SGHAMPVLGFGTGSSTPPADLAATIAHAVRLGYRHLDTAAVY 68
>01_06_1336 +
36396904-36397014,36397141-36397191,36397681-36397757,
36397876-36397963,36398616-36398891,36399002-36399250,
36400315-36400398
Length = 311
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +1
Query: 379 TGHSCRVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYXXXKLXXKAIXNXIDXXXV 558
TG + LGT P + + V A+ GYR ID A +Y A+ + V
Sbjct: 9 TGAKIPSVGLGTWQSDPGVVGDAVYAAVKAGYRHIDCARMYKNENEVGIALKKLFEEGVV 68
Query: 559 RRXXXFI 579
+R FI
Sbjct: 69 KREDLFI 75
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 IALGTALLP-----PRLTTEIVETAIDMGYRAIDTAYIYXXXKLXXKAIXNXI 543
+ +GTA P P ++V AI+ GYR DTA +Y + A+ +
Sbjct: 15 VGMGTASFPLGATDPSTVKDVVLRAIEAGYRHFDTAAVYQTEAILGDAVAEAV 67
>10_01_0066 + 848523-849269,849520-849741
Length = 322
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 400 IALGTALLP---PRLTTEIVETAIDMGYRAIDTAYIYXXXKLXXKAIXNXI 543
I +GTA P TT + AI++GYR DTA +Y +A+ +
Sbjct: 21 IGMGTAAFPFTSSEETTAALLRAIELGYRHFDTARLYATEGCVSEAVAEAV 71
>10_01_0065 + 845447-846187,846969-847193
Length = 321
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 400 IALGTALLP---PRLTTEIVETAIDMGYRAIDTAYIYXXXKLXXKAIXNXI 543
+ +GTA P TT + AI++GYR DTA IY +A+ +
Sbjct: 19 VGMGTAAFPFTSSEDTTAAMLRAIELGYRHFDTARIYATEGCVGEAVAEAV 69
>02_01_0179 -
1227573-1227803,1227916-1228138,1228159-1228185,
1228519-1228651,1228748-1228865,1229357-1229451,
1229886-1230048
Length = 329
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +1
Query: 376 ATGHSCRVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYXXXKLXXKAIXNXIDXXX 555
++GH+ + LG + +++ +A+ +GYR D A Y A+
Sbjct: 16 SSGHTMPSVGLGVWRMDSPAIRDLIHSALRIGYRHFDCAADYQNEAEVGDALAEAFQTGL 75
Query: 556 VRRXXXFI 579
V+R FI
Sbjct: 76 VKREDLFI 83
>09_02_0012 +
2965797-2966714,2966756-2967011,2967051-2967147,
2967175-2967634,2967804-2968117,2968220-2968235
Length = 686
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 213 VKMESPGSGQRRLDNGKQKRDTGDLTDEQYKTRIAELNEAKLKGSVKEVATLKLRD 380
V E PG G + D G +T + K R A L EA + +KE A K +D
Sbjct: 603 VYAEFPGGGNNDAQEPLLE-DAGKITCTRQKVRAASLEEAVFRTEIKEGAEGKAKD 657
>10_01_0070 +
902999-903354,904354-904600,904718-904897,905087-905332
Length = 342
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = +1
Query: 379 TGHSCRVIALGTALLP------PRLTTEIVETAIDMGYRAIDTAYIY 501
+G ++ +GTA P P + V AID GYR DTA Y
Sbjct: 23 SGKPMPLVGMGTASFPLDAPQLPATVRDAVLRAIDAGYRHFDTAAAY 69
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 317 CDPGLILFVCEVSRVSLLFAVVQAPLPAPGRLHLDRS 207
C L+ F+ + L F V P PAP LH R+
Sbjct: 341 CSTSLVHFLIALQPTPLPFGVQLKPAPAPRELHTSRA 377
>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +3
Query: 210 SVKMESPGSGQRRLDNGKQKRDTGDLTDEQYKTRIAELNEAKLKGSVKEVATLKLRDGTF 389
S + S G+ Q + + K+K + ++ + I + N + +K EV T +++
Sbjct: 1218 SSNLISEGNKQIEMSSRKEKLRPS-IDNQDMQKSIGQDNHSHMKEGKSEVHTTRVK---- 1272
Query: 390 MPGHSLGHSFASSTVNNGNS 449
PG S H+ S V NG+S
Sbjct: 1273 -PGASKNHTQLRSNVENGDS 1291
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 232 GAGSGAWTTANRSETRETSQTNNIRPGSQN*TKLS*KG 345
G G+GA ++A + TR+T N+ R GS + +S G
Sbjct: 215 GGGAGAGSSAGGAMTRDTEAENDSRSGSDHLDAISAAG 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,775
Number of Sequences: 37544
Number of extensions: 267338
Number of successful extensions: 855
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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