Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G16
(1227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.081
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 0.61
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 3.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 7.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 7.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 7.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 7.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 7.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 16/27 (59%)
Frame = +2
Query: 881 PPPPXPPXGGXGXXXXXXXPPPPPPPP 961
PPPP PP G G PPPPPPPP
Sbjct: 761 PPPPPPPPGVAG----AGPPPPPPPPP 783
Score = 33.9 bits (74), Expect = 0.046
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 487 PPPPPPPPXXXXXXXXXXXXXPPPPPXXXXGG 392
PPPPPPPP PPPPP GG
Sbjct: 761 PPPPPPPPGVAGAGPPPP---PPPPPAVSAGG 789
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 883 PPPPPXXGGXGGXXXXXXXPPPPPPXP 963
PPPPP G G PPPPPP P
Sbjct: 761 PPPPPPPPGVAGAGP----PPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.43
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -3
Query: 484 PPPPPPPXXXXXXXXXXXXXPPPPPXXXXGGGPXXXXXXXGPXXGGXXXXXXPP 323
PPPPPP PPP P GGP G G PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM---GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 883 PPPPPXXGGXGGXXXXXXXPPPPPPXP 963
PPP P GG PPPPPP P
Sbjct: 752 PPPAPIMGG----------PPPPPPPP 768
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.081
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 881 PPPPXPPXGGXGXXXXXXXPPPPPPP 958
PPPP PP G PPPPPPP
Sbjct: 9 PPPPPPPPG----FEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 487 PPPPPPPPXXXXXXXXXXXXXPPPPP 410
PP PPPP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect(2) = 0.61
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 505 GXXEXXPPPPPPPP 464
G PPPPPPPP
Sbjct: 939 GVMPAFPPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 21.4 bits (43), Expect(2) = 0.61
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 424 PPPPPXXXXGGG 389
PPPPP GG
Sbjct: 949 PPPPPLVSAAGG 960
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Frame = +2
Query: 881 PPPPXP-------PXGGXGXXXXXXXPPPPPP 955
PPPP P P G G PPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Frame = +2
Query: 881 PPPPXPPXG---GXGXXXXXXXPPPPPPPP 961
PPPP PP G PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Frame = +1
Query: 883 PPPPPXXGGXGG---XXXXXXXPPPPPP 957
PPPPP G PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 884 PPPXPPXGGXGXXXXXXXPPPPPPP 958
PPP PPPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Frame = -3
Query: 487 PPPPPPP-------PXXXXXXXXXXXXXPPPPPXXXXGG 392
PPPPPPP P PPPPP G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Frame = +2
Query: 881 PPPPXPPXGGXGXXXXXXX---PPPPPPPP 961
PPP P PPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Frame = +1
Query: 883 PPP---PPXXGGXGGXXXXXXXPPPPPPXP 963
PPP PP PPPPPP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 488 PPPPPPPP 465
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Frame = -3
Query: 487 PPPPP---PPPXXXXXXXXXXXXXPPPP 413
PPPPP PPP PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 954 GGGGGGXXXXXXXPXPPXGGXGGGG 880
GGG GG P P GG GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFG 211
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 488 PPPPPPPP 465
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 938 PPPPPPPP 961
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.161 0.577
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,413
Number of Sequences: 5004
Number of extensions: 35231
Number of successful extensions: 514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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