Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G11
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.73
03_01_0515 - 3864796-3865425 31 0.96
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.2
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 30 2.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.9
11_06_0610 - 25449085-25453284 29 6.8
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 28 9.0
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 0.73
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = +2
Query: 170 PXXXSXXPPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKTLXNXGGXPPKXXXKXPXK 349
P PP PPP P P PP P K G PP K P
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAK------GPPPPPPPKGPSP 364
Query: 350 NXXPPXXAXXXXP 388
PP P
Sbjct: 365 PPPPPPGGKKGGP 377
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +2
Query: 170 PXXXSXXPPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKTLXNXGGXPP 322
P PP PPP P P PP P GG PP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.5 bits (68), Expect = 0.96
Identities = 19/68 (27%), Positives = 21/68 (30%)
Frame = +2
Query: 170 PXXXSXXPPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKTLXNXGGXPPKXXXKXPXK 349
P S PP G PPP P PP P + PP P K
Sbjct: 55 PSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAA-SPPPPPPSPPPPSPVK 113
Query: 350 NXXPPXXA 373
+ PP A
Sbjct: 114 SSPPPPPA 121
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Frame = +2
Query: 218 PPPXPXXXXXPXPPA-XQXXPXKKGKTLXNXGGXPPKXXXKXPXKNXXPP 364
PPP P P PP P G GG PP P PP
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPP 400
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/88 (25%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Frame = +2
Query: 152 HSKLNYPXXXSXXPP---SXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKTLXNXGGXPP 322
H ++P PP + G PPP P P PP P G G PP
Sbjct: 296 HHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAG-----AGSGPP 350
Query: 323 KXXXKXPXKNXXPPXXAXXXXPRXGXXG 406
PP P G G
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAG 378
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/61 (24%), Positives = 20/61 (32%)
Frame = +3
Query: 258 PPXSXAPXKKAKPXXXGEXSPQNXXXKXPQKTXTPPQXLXXXXPXXXXXXXXTPPXXXPX 437
PP P + +P + PQ K +K PP + P PP P
Sbjct: 171 PPPPPPPAPEPEPEPPKKEEPQPPPPKEEEKPEPPPAVIIVEPPAPAPEPEPEPPKKEPP 230
Query: 438 P 440
P
Sbjct: 231 P 231
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +2
Query: 194 PSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKTLXNXGGXPPKXXXKXPXKNXXPP 364
PS PPP P PPA P GK PP+ K P PP
Sbjct: 727 PSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQ-APKPPGTVPPPP 782
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/100 (22%), Positives = 26/100 (26%)
Frame = +3
Query: 192 PPPXGGXXXPPXXPXXXXXPXXPPXSXAPXKKAKPXXXGEXSPQNXXXKXPQKTXTPPQX 371
PP P P PP + P + + P SP P T + P
Sbjct: 1074 PPAKSSPPHEPISPPETPEKSYPPST--PEESSPPSVPKASSPPTEKSLPPPATVSLPPP 1131
Query: 372 LXXXXPXXXXXXXXTPPXXXPXPXAXXXXXXXXXPSRXPP 491
P PP P P A S PP
Sbjct: 1132 TVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPP 1171
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = +3
Query: 192 PPPXG--GXXXPPXXPXXXXXPXXPPXSXAPXKKAKPXXXGEXSPQNXXXKXPQKTXTPP 365
PPP PP P PP + P K + P P K P+K P
Sbjct: 91 PPPAQKPSKVSPPPPPPQKSAKVSPPPAAKPPKLSPPNLAKATKPSRLAAKPPKKAAPGP 150
Query: 366 Q 368
+
Sbjct: 151 E 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,979
Number of Sequences: 37544
Number of extensions: 218482
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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