Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G11
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.1
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 192 PPPXGGXXXPPXXPXXXXXPXXPPXSXAPXKKAKPXXXGEXSPQNXXXKXP 344
PPP PP P P PP AP P G +PQ K P
Sbjct: 86 PPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLG-VAPQPPRPKTP 135
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Frame = +2
Query: 170 PXXXSXXPPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKT--LXNXGGXPPKXXXK-X 340
P S PP PPP P P PP P G + G PP +
Sbjct: 248 PLAGSGSPPPPPAAGSPPP-PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 306
Query: 341 PXKNXXPPXXAXXXXPRXG 397
P PP A P G
Sbjct: 307 PPTGSLPPPQAGGSPPPAG 325
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/81 (23%), Positives = 23/81 (28%)
Frame = +3
Query: 192 PPPXGGXXXPPXXPXXXXXPXXPPXSXAPXKKAKPXXXGEXSPQNXXXKXPQKTXTPPQX 371
PPP G PP P P PP +P + P SP P +
Sbjct: 281 PPPPAGGSPPP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 338
Query: 372 LXXXXPXXXXXXXXTPPXXXP 434
P +PP P
Sbjct: 339 APERSPPTGSPPTGSPPTGRP 359
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Frame = +2
Query: 170 PXXXSXXPPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKT--LXNXGGXPPKXXXK-X 340
P S PP PPP P P PP P G + G PP +
Sbjct: 269 PLAGSGSPPPPPAAGSPPP-PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 327
Query: 341 PXKNXXPPXXAXXXXPRXG 397
P PP A P G
Sbjct: 328 PPTGSLPPPQAGGSPPPAG 346
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/81 (23%), Positives = 23/81 (28%)
Frame = +3
Query: 192 PPPXGGXXXPPXXPXXXXXPXXPPXSXAPXKKAKPXXXGEXSPQNXXXKXPQKTXTPPQX 371
PPP G PP P P PP +P + P SP P +
Sbjct: 302 PPPPAGGSPPP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 359
Query: 372 LXXXXPXXXXXXXXTPPXXXP 434
P +PP P
Sbjct: 360 APERSPPTGSPPTGSPPTGRP 380
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Frame = +2
Query: 170 PXXXSXXPPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKT--LXNXGGXPPKXXXK-X 340
P S PP PPP P P PP P G + G PP +
Sbjct: 254 PLAGSGSPPPPPAAGSPPP-PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 312
Query: 341 PXKNXXPPXXAXXXXPRXG 397
P PP A P G
Sbjct: 313 PPTGSLPPPQAGGSPPPAG 331
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/81 (23%), Positives = 23/81 (28%)
Frame = +3
Query: 192 PPPXGGXXXPPXXPXXXXXPXXPPXSXAPXKKAKPXXXGEXSPQNXXXKXPQKTXTPPQX 371
PPP G PP P P PP +P + P SP P +
Sbjct: 287 PPPPAGGSPPP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 344
Query: 372 LXXXXPXXXXXXXXTPPXXXP 434
P +PP P
Sbjct: 345 APERSPPTGSPPTGSPPTGRP 365
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/61 (24%), Positives = 19/61 (31%)
Frame = +3
Query: 192 PPPXGGXXXPPXXPXXXXXPXXPPXSXAPXKKAKPXXXGEXSPQNXXXKXPQKTXTPPQX 371
PPP P P P PP + ++ P P+N P PP
Sbjct: 138 PPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPR 197
Query: 372 L 374
L
Sbjct: 198 L 198
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Frame = +2
Query: 191 PPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKTL---XNXGGXPPKXXXKXPXKNXXP 361
PP G PPP P P PP P + GG PP P
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Query: 362 P 364
P
Sbjct: 349 P 349
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +1
Query: 403 GGXXPPPXXNRXPXRXXXXXXXXALPGXPPXXXGXXXXRGGXXXXPPPXGGXXGXP 570
GG PPP P P PP G GG PPP GG P
Sbjct: 724 GGPPPPPPPGGLPPITGG-------PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +1
Query: 403 GGXXPPPXXNRXPXRXXXXXXXXALPGXPPXXXGXXXXRGGXXXXPPPXGGXXGXP 570
GG PPP P P PP G GG PPP GG P
Sbjct: 724 GGPPPPPPPGGLPPITGG-------PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Frame = +2
Query: 191 PPSXXGXXXPPPXPXXXXXPXPPAXQXXPXKKGKTL---XNXGGXPPKXXXKXPXKNXXP 361
PP G PPP P P PP P + GG PP P
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Query: 362 P 364
P
Sbjct: 359 P 359
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +1
Query: 403 GGXXPPPXXNRXPXRXXXXXXXXALPGXPPXXXGXXXXRGGXXXXPPPXGGXXGXP 570
GG PPP P P PP G GG PPP GG P
Sbjct: 307 GGPPPPPPPGGLPPITGG-------PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,562,284
Number of Sequences: 27780
Number of extensions: 119916
Number of successful extensions: 645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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