Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_G10
         (1022 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.83 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.83
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 691 GXGRXXAXGGGXGGXXXXXVVGVXGGXGGGXXGGGGG 581
           G G   A G   G      VVG   G GGG  G   G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +3

Query: 603 PPPXPPXTPTTXXXXXPPXPPPXAXXRPXPGXPHPXXP 716
           P P P  +P       PP P         PG P    P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 11/45 (24%), Positives = 13/45 (28%)
 Frame = +1

Query: 628 PPXPPTXAPPXPXXXPXXAPPRALXTXXPPAXPPXXXPXNQTXXP 762
           P   P  +P  P       P +      PP  PP   P      P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
 Frame = +3

Query: 582 PPPPPXXPPPXPPX-TPTTXXXXXPPXPPPXAXXRPXP 692
           P P P   P  P   +P       PP  PP A     P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 878 PXPHXXPXPPXRXPRPXPXPTXP 946
           P PH  P  P R   P P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPP 47


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 585 PPPPXXPPPXP 617
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 588 PPPXXPPPXPP 620
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,141
Number of Sequences: 438
Number of extensions: 5367
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34104798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)