Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G09
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.51
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.68
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.68
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.68
U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (gr... 28 6.3
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -1
Query: 479 PPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPP PP G F PP GG PP G PPPP
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGG---IPPPPPMFGAPPPPP 118
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 383 PXXXGGGXFFSPPXXXXGGXPPPPLFLXXXXFXPP 279
P G G PP GG PPPP + PP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -1
Query: 386 PPXXXGGGXFFSPPXXXXGGXPPPPLFLXXXXFXPP 279
PP G F PP G PPPP+F PP
Sbjct: 66 PPPVPNG--FIPPPPGPGGIPPPPPMFAGGIPPPPP 99
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -1
Query: 482 PPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPPP PP G PP GG SPP G PPPP
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG----SPPPAGTGSPPPPP 333
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = -1
Query: 485 TPPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGG---GXFFSPPXXXXGGXPPP 315
+PPPP SPP G PP G SPP GG PPP
Sbjct: 236 SPPPPPPPKGSPPLAGS----GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 314 P 312
P
Sbjct: 292 P 292
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -1
Query: 482 PPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPPP PP G PP GG SPP G PPPP
Sbjct: 256 PPPPAAGSPPPPRTGSPP--------PPPTGSPPPPPAGG---SPPPPRAGSPPPPP 301
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -1
Query: 485 TPPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPP 315
+PPPP PP GG PP G S P GG PPP
Sbjct: 271 SPPPPPTGSPPPPPAGG----SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -1
Query: 482 PPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPPP PP G PP GG SPP G PPPP
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG----SPPPAGTGSPPPPP 354
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = -1
Query: 485 TPPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGG---GXFFSPPXXXXGGXPPP 315
+PPPP SPP G PP G SPP GG PPP
Sbjct: 257 SPPPPPPPKGSPPLAGS----GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 314 P 312
P
Sbjct: 313 P 313
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -1
Query: 482 PPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPPP PP G PP GG SPP G PPPP
Sbjct: 277 PPPPAAGSPPPPRTGSPP--------PPPTGSPPPPPAGG---SPPPPRAGSPPPPP 322
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -1
Query: 485 TPPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPP 315
+PPPP PP GG PP G S P GG PPP
Sbjct: 292 SPPPPPTGSPPPPPAGG----SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -1
Query: 482 PPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPPP PP G PP GG SPP G PPPP
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG----SPPPAGTGSPPPPP 339
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = -1
Query: 485 TPPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGG---GXFFSPPXXXXGGXPPP 315
+PPPP SPP G PP G SPP GG PPP
Sbjct: 242 SPPPPPPPKGSPPLAGS----GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 314 P 312
P
Sbjct: 298 P 298
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -1
Query: 482 PPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPPP PP G PP GG SPP G PPPP
Sbjct: 262 PPPPAAGSPPPPRTGSPP--------PPPTGSPPPPPAGG---SPPPPRAGSPPPPP 307
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -1
Query: 485 TPPPPXKKXXSPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPP 315
+PPPP PP GG PP G S P GG PPP
Sbjct: 277 SPPPPPTGSPPPPPAGG----SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
>U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (grd
related) protein10 protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 544 FFFXXXGGGXXXXXXKKXXXPPPPP 470
FFF GGG + PPPPP
Sbjct: 22 FFFGAAGGGGACGCAPRPACPPPPP 46
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/83 (26%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Frame = -1
Query: 482 PPPPXKKXX---SPPXXGGXXFFXXXXXFXXKXXXPPXXXGGGXFFSPPXXXXGGXPPPP 312
PPPP ++ +PP + PP GG PP GG PP
Sbjct: 254 PPPPQQQQQQFQAPPPPMASHSSISSTPVQQQGFAPPQQFGGPPPSGPPSEY-GGYAPPQ 312
Query: 311 LFLXXXXFXPPXXXXQXGXGQXP 243
PP Q G G P
Sbjct: 313 QQQQQFGAPPPQGAPQQGFGAPP 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,842
Number of Sequences: 27780
Number of extensions: 196511
Number of successful extensions: 824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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