Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_G08
         (1025 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    80   1e-13
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    75   3e-12
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    71   5e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    69   1e-10
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   2e-06
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.003
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.059
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.10 
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_A6SWU5 Cluster: Uncharacterized conserved protein; n=1;...    36   2.2  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   6.8  
UniRef50_A5HC74 Cluster: Putative uncharacterized protein; n=1; ...    34   6.8  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   6.8  
UniRef50_Q4RMS4 Cluster: Chromosome 3 SCAF15018, whole genome sh...    33   9.0  
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet...    33   9.0  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 79.8 bits (188), Expect = 1e-13
 Identities = 39/48 (81%), Positives = 40/48 (83%)
 Frame = +3

Query: 486 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 629
           SK+  T    R  RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 49


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 74.9 bits (176), Expect = 3e-12
 Identities = 35/42 (83%), Positives = 37/42 (88%)
 Frame = +3

Query: 504 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 629
           V+ PR  RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFP
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFP 85


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 70.9 bits (166), Expect = 5e-11
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = +3

Query: 510 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 629
           RPR  RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFP
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFP 117



 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +2

Query: 317 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 415
           R   +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 41/60 (68%), Positives = 42/60 (70%)
 Frame = -2

Query: 559 MLVRGAEPMEKRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAERP 380
           MLVRGAEPMEKR +  L  V   LL  CS  L    PLILWITVLPPLSEL PLAA ERP
Sbjct: 1   MLVRGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +2

Query: 293 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 451
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 96  DPDMIRYIDEFGQTTTRMQ 152
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.059
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 291 SALMNRPTRGERRFAYW 341
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.10
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 363 ERGSGRAPNTQTASPRALADSLMQ 292
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 36.3 bits (80), Expect = 1.3
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +3

Query: 453 ITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 629
           I  +R   + + + P T        F   S PLT+ITKI  Q +  +T+ +YK T  FP
Sbjct: 44  IMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFP 102


>UniRef50_A6SWU5 Cluster: Uncharacterized conserved protein; n=1;
           Janthinobacterium sp. Marseille|Rep: Uncharacterized
           conserved protein - Janthinobacterium sp. (strain
           Marseille) (Minibacterium massiliensis)
          Length = 212

 Score = 35.5 bits (78), Expect = 2.2
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = -2

Query: 586 PLT*ASIFVMLVRGAEPMEKRQQRGL---FTVPGLLLAFCSHVLSCVIPLILWITVLPPL 416
           PLT AS+ + L+    P+ + + RGL    T+ G ++A     +S V  L+L  T+L PL
Sbjct: 50  PLTVASLIMFLIANLFPIVEIELRGLRSQTTLTGAVMALAGEGMSLVAMLVLATTLLFPL 109

Query: 415 SELIPL 398
            +L+ L
Sbjct: 110 LQLLIL 115


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 6.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 174 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 341
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_A5HC74 Cluster: Putative uncharacterized protein; n=1;
           Adineta vaga|Rep: Putative uncharacterized protein -
           Adineta vaga
          Length = 400

 Score = 33.9 bits (74), Expect = 6.8
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = -1

Query: 626 ETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPP 447
           E  GIF    GF  + L +D C  + GG A  +T  +    G+W + G L  C+  + PP
Sbjct: 247 EGGGIF-KRKGFYYTMLGIDCCFCQWGGDA--RTFISNNPLGNWTYFGQLNYCADGKAPP 303

Query: 446 DSVD 435
           D +D
Sbjct: 304 DHID 307


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 6.8
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 254 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 90
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


>UniRef50_Q4RMS4 Cluster: Chromosome 3 SCAF15018, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 3
           SCAF15018, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 754

 Score = 33.5 bits (73), Expect = 9.0
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +3

Query: 420 GGNTVIHRIRGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR 599
           GG+ V   ++GI+ ERT  +    +P  +  PR W  S+   P   +     +++GG+ R
Sbjct: 611 GGHGVPGELQGIS-ERTLLELTRGKP-LLSHPRAWFVSLDGKPAAQVRHSIIELQGGQRR 668

Query: 600 QDYKDT 617
               DT
Sbjct: 669 PSSNDT 674


>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
           arietinum|Rep: Reverse transcriptase - Cicer arietinum
           (Chickpea) (Garbanzo)
          Length = 37

 Score = 33.5 bits (73), Expect = 9.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 426 NTVIHRIRGITQERTCE 476
           NTVIH  +GITQERTCE
Sbjct: 21  NTVIHXNQGITQERTCE 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,703,123
Number of Sequences: 1657284
Number of extensions: 11573738
Number of successful extensions: 30625
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 29679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30618
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 97980318480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)