Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_G07
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.20 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.20 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.61 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   9.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 604 PPGXXXSPXXPPXXXPPXXPPFXPP 678
           PPG    P  PP   PP  PP  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 0.80
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 603 PPXXXXXPXXSPXXXPPXXPPXXPPP 680
           PP     P   P   PP  PP  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
 Frame = +1

Query: 493 PXKXPGTXKRPVXCXFP*APP-PXXPPXXXPXXXXWXXPP-GXXXSPXXPPXXXPPXXPP 666
           P   P T ++P       A   P  PP   P       PP G       PP   PP  PP
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425

Query: 667 FXPP 678
             PP
Sbjct: 426 SAPP 429



 Score = 29.9 bits (64), Expect = 0.46
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +1

Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
           P APPP  P    P              P   P   PP  PP  PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +1

Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPPL 681
           P   PP  PP   P       P     +P  PP    P   P  PPL
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL---PPSAPIAPPL 459


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 547  APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
            APP    P   P       PP     P  PP   PP  P    P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 29.1 bits (62), Expect = 0.80
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
 Frame = +1

Query: 541  P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXP-PXXPPFXPP 678
            P + PP  P    P       PP    S   PP   P P  PP  PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +2

Query: 545 RXRPPXXLPKXXPXFXGGXXPXXXXXPXXFPPXXPPXXXPXF 670
           R  PP  +PK  P   GG        P    P   P   P F
Sbjct: 451 RKVPPSTVPKMNPKLQGGNSVTAPSTPSKVLPAMSPKVAPKF 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,531
Number of Sequences: 5004
Number of extensions: 30485
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)