Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_G07
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 35 0.062
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 34 0.14
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 33 0.33
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 32 0.43
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 1.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 4.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 4.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.0
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 5.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.3
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 28 7.1
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 28 7.1
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 28 7.1
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 35.1 bits (77), Expect = 0.062
Identities = 21/77 (27%), Positives = 25/77 (32%)
Frame = +1
Query: 448 HRIRG*RRKEHVXXRPXKXPGTXKRPVXCXFP*APPPXXPPXXXPXXXXWXXPPGXXXSP 627
H++ + +H P P R P PPP P P PP SP
Sbjct: 108 HQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSP 167
Query: 628 XXPPXXXPPXXPPFXPP 678
P PP P PP
Sbjct: 168 QRRPPRTPPSPEPRNPP 184
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +1
Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
P PPP P P PP P P PP PP PP
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 553 PPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPPL 681
PP PP P PP PP PP PP PP+
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPM 73
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +1
Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXP 675
P PPP PP P PP P PP PP P + P
Sbjct: 44 PCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP--PPPPMPSYSP 86
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 603 PPXXXXXPXXSPXXXPPXXPPXXPPP 680
PP P P PP PP PPP
Sbjct: 52 PPQFCPPPPMCPPPPPPPPPPMCPPP 77
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +1
Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPPL 681
P PP P P PP P PP P PP PP+
Sbjct: 36 PMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPP-PPPM 81
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = -2
Query: 677 GGXXGGXXGGXXXGGXXGXXXXP-GGXXHXXXXGXXXGGXXGGGAXG 540
GG GG GG GG G P G G GG GGG G
Sbjct: 126 GGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRG 172
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -2
Query: 674 GXXGGXXG--GXXXGGXXGXXXXPGGXXHXXXXGXXXGGXXGGGAXG 540
G GG G G G G PGG + G GG GGG G
Sbjct: 23 GGWGGGPGRWGGWGGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWG 69
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 677 GGXXGGXXGGXXXGGXXGXXXXPGGXXHXXXXGXXXGGXXGGG 549
G GG GG GG G G H G GG GGG
Sbjct: 86 GAAVGGGYGGAVGGGGGGGYGGGHGGGHGGAVGGGYGGGGGGG 128
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
P P PP P + PP P PP PP PP P
Sbjct: 50 PMPVCPPPP-PCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRP 91
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 538 FP*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
+P PPP PP P PG P PP PP PP
Sbjct: 260 YPPVPPP--PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPP-FXPP 678
P P PP PPG P P PP P F PP
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 538 FP*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
+P PPP PP P PG P PP PP PP
Sbjct: 270 YPPVPPP--PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPP-FXPP 678
P P PP PPG P P PP P F PP
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 603 PPXXXXXPXXSPXXXPPXXPPXXPPP 680
PP P +P PP PP PPP
Sbjct: 497 PPPPPLPPIATPSSVPPPPPPPPPPP 522
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 547 APPPXXPPXXXP--XXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
+PPP PP P PP SP P PP P PP
Sbjct: 236 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 547 APPPXXPPXXXP--XXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
+PPP PP P PP SP P PP P PP
Sbjct: 257 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 547 APPPXXPPXXXP--XXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
+PPP PP P PP SP P PP P PP
Sbjct: 242 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +1
Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
P PPP PP P P S PP PP PP
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPP 810
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +1
Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
P PPP PP P P S PP PP PP
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPP 810
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
P P PP P P P PP P PP PP
Sbjct: 108 PAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPP 150
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +1
Query: 541 P*APPPXXPPXXX--PXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPPL 681
P PPP PP P PP +P P PP P F P +
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSM 1387
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +1
Query: 520 RPVXCXFP*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXPP 678
RP P PP PP P P PP P PP PP
Sbjct: 75 RPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPP 127
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPP-----XXPPFXPP 678
PPP PP P PP PP PP PP PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPP----------GXXXSPXXPPXXXPPXXPPFXP 675
PPP PP P PP G P PP PP PP P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPP-----XXPPFXPP 678
PPP PP P PP PP PP PP PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPP----------GXXXSPXXPPXXXPPXXPPFXP 675
PPP PP P PP G P PP PP PP P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPP-----XXPPFXPP 678
PPP PP P PP PP PP PP PP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Frame = +1
Query: 550 PPPXXPPXXXPXXXXWXXPP----------GXXXSPXXPPXXXPPXXPPFXP 675
PPP PP P PP G P PP PP PP P
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXP 663
P APP P P PPG P P PP P
Sbjct: 184 PPAPPGPDPHSLFPPQCPCEAPPGDGGPPGQPGPDGPPGAP 224
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 541 P*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXP 663
P APP P P PPG P P PP P
Sbjct: 165 PPAPPGPDPHSLFPPQCPCEAPPGDGGPPGQPGPDGPPGAP 205
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 523 PVXCXFP*APPPXXPPXXXPXXXXWXXPPGXXXSPXXPPXXXPPXXPPFXP 675
P C P PPP P P P P PP P P P
Sbjct: 87 PPPCFGPACPPPCFGPACAPPAPIIVNGPPPCFGPACPPPCFGPACAPSAP 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,681,870
Number of Sequences: 27780
Number of extensions: 216190
Number of successful extensions: 1036
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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