Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_F24
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 2.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 3.6
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 6.3
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 6.3
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 6.3
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 8.4
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 8.4
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 8.4
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 26 8.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.4
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 188 EELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQ 316
E L +RAL S L + ++A S+++ G +K +++N+N+
Sbjct: 824 ENLQSRALELESALEQSVSDAKYSKAIMQSGLSKLLSSINENK 866
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.5 bits (58), Expect = 2.7
Identities = 31/133 (23%), Positives = 55/133 (41%)
Frame = +2
Query: 116 QKLEXSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRK 295
Q+++ S +P A+S+ IA +E A+ + + SS+ + SG
Sbjct: 535 QEIQPSSSVPEAASNEIAEKEPA-----VTAIESITERKEEAPVISSSEKIESG------ 583
Query: 296 TALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGKI 475
T+++ + + D LER QD+ + YSSE S S+D+ K
Sbjct: 584 TSISTSDTKGGLANFENDSLEELERLIQQN-NAEQDEPSYKFHKYEYSSEESGSEDEFKS 642
Query: 476 QHQVDEEALSNED 514
+ +SN+D
Sbjct: 643 EKDTKGYVISNDD 655
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 470 KIQHQVDEEALSNEDVEPAPVYDFRAI 550
K QH +++A N DVE P+ + ++I
Sbjct: 153 KTQHDENDDASDNSDVEEDPILEHKSI 179
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 6.3
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 140 LPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQI 319
+ P+SSSS AA + +L +TLT + +A+SS + S+ ++++ +
Sbjct: 108 IDPSSSSSSAASSTT-STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSF 166
Query: 320 PKTNVHSGGDGCLLLERTTLSGIP 391
T++ S G +L T S +P
Sbjct: 167 --TSLSSSGFSTVLSSTNTTSALP 188
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 437 SSEHSMSQDQGKIQHQVDEE 496
S EH+ S D G QH +D+E
Sbjct: 46 SKEHNSSPDDGPWQHDLDQE 65
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 440 WNMHQVAILGHYHLELKEYHLEWFSLIIDNRPHQN-EHWF*GSDSYLRLSFFLHCHHSQQ 264
W M + +E + LE+F LI ++ P QN W+ YL L + H +
Sbjct: 431 WGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQCME 490
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 143 PPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIP 322
PP SSSS + + LP R L + ++LS Q GS S R+++ + +IP
Sbjct: 422 PPISSSSTTPRPDDKPSLPPRGL-------SEDNDSLSLQKTGS--SDTRRSSFSTLKIP 472
Query: 323 KTNV 334
+++
Sbjct: 473 DSDI 476
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 153 EAGGNPSDXSSFCXSAICDILSAXCNXMQKYCQKTT 46
EAG P D SFC + +++ + + Y Q +T
Sbjct: 262 EAGETPEDVGSFCAKKLLEVIESG-GCVDPYTQPST 296
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 473 IQHQVDEE-ALSNEDVEPAPVYD-FRAIEEXE 562
++ QV+E+ AL NE+ EP P D F +EE +
Sbjct: 251 VETQVEEQPALENEESEPEPSDDQFDLVEEVD 282
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +2
Query: 95 MSQIAEXQKLEXSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGS 274
+ IA+ K E +D L P S+ A EKP + L+ ++ A+
Sbjct: 67 LKNIAKKNKRERNDKLIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSY 126
Query: 275 GGSAKRKTAL 304
+ K+K +L
Sbjct: 127 AETPKKKHSL 136
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 221 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 328
STL +++ S S+G G S + + N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,177
Number of Sequences: 5004
Number of extensions: 43112
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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