Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_F24
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0319 - 27872601-27874457 30 2.2
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.8
06_03_1157 - 28074675-28074710,28075318-28075514,28075676-280758... 29 5.0
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 29 5.0
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 29 6.7
05_03_0459 - 14284513-14286336 29 6.7
02_02_0280 - 8515894-8517309 29 6.7
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 28 8.8
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 28 8.8
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 28 8.8
>02_05_0319 - 27872601-27874457
Length = 618
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +2
Query: 158 SSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVH 337
+S+ A P LPT A+ + L R TN+ SS + S S+ +A + Q+
Sbjct: 204 NSVTAASSPSLPLPT-AVNSTALLARSPTNSSSSTASSSASSSPPISAASSRQLLSEAAA 262
Query: 338 SGGDGCLLLERTTLSGIPL 394
+ DG + LS + L
Sbjct: 263 AVADGNHTAAASLLSALKL 281
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 143 PPASSSSIAAQEKPREELPTRALRPRSTLTRKTTN 247
PP+SSSS A+ E P R+ RP + T TT+
Sbjct: 680 PPSSSSSSPARSSGSTEQPHRSKRPWAETTTTTTS 714
>06_03_1157 -
28074675-28074710,28075318-28075514,28075676-28075875,
28076190-28076287,28076798-28076854,28076952-28077010,
28077705-28077738,28077840-28077890
Length = 243
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 131 SDGLPPASSS--SIAAQEKPRE--ELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKT 298
SD L P S S AA+E P E+ R TRK + ALS+ G G +R++
Sbjct: 114 SDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRES 173
Query: 299 ALNKN 313
N++
Sbjct: 174 YDNRD 178
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 119 KLEXSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKR 292
K+E P ++ A Q + +++ T A PRS ++ + ++VG+GGS+ +
Sbjct: 348 KMEILPSHPMTQQNAAAQQMQQNKDVKTNASNPRSN-AKQDSGTGKGRAVGTGGSSTK 404
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 28.7 bits (61), Expect = 6.7
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = +2
Query: 125 EXSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRK-----TTNALSSQSVGSGGSAK 289
E +D L P S A +E+ ++ LP L R TNA S+ GSAK
Sbjct: 192 EITDLLAPEEISKAALEERQKKPLPLMEDGKGGVLVRGLEEEIVTNASEIFSLLERGSAK 251
Query: 290 RKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQ 400
R+TA + HS + ++ T G LI+
Sbjct: 252 RRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIK 288
>05_03_0459 - 14284513-14286336
Length = 607
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/94 (24%), Positives = 43/94 (45%)
Frame = +2
Query: 215 PRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPL 394
PRS+ +R +++ SS S GSG S+ + + SG C ++ SG
Sbjct: 266 PRSSSSRSDSSSSSSSSNGSGSSSSSSSGAS----------SGSSSC-AGSSSSSSGSDT 314
Query: 395 IQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEE 496
D + RPD + + ++ + ++H+V E+
Sbjct: 315 DADADSASNRPDTTTDHPTEAEVKPMVEHEVMEQ 348
>02_02_0280 - 8515894-8517309
Length = 471
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 221 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDG 352
+ + +KT++ ++ G+G + R KN T + SGG G
Sbjct: 379 AAMAQKTSDTIAQAGHGAGEAKNRAAESGKNSSATTTIGSGGGG 422
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +2
Query: 98 SQIAEXQKLEXSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSG 277
+QIA + L P+ ++S +A P P A S + TT LSS G+
Sbjct: 201 TQIAGTVTSQPQQSLIPSGATSSSAF--PSFSTPASAPSSSSLFSTPTTPTLSSNLFGTS 258
Query: 278 GSAKRKTALNKNQIP 322
GSA+ T P
Sbjct: 259 GSAQLSTPFGTVSTP 273
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 368 RTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 514
+T+L I + D D+ D +SE + +D + ++DE++LS+ED
Sbjct: 243 KTSLGQIAYSEWDEDE-IDEDPLNSEDEIDEDPLNSEDEIDEDSLSSED 290
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 28.3 bits (60), Expect = 8.8
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +2
Query: 131 SDGLPPASS-SSIAAQEKPREEL-PTRALRPRSTLTRKTTNALSSQSVG---SGGSAKRK 295
SDG PA S S + Q R L PT+ PR L + SS S+G + ++
Sbjct: 308 SDGRYPADSLGSNSVQSVRRRNLSPTKKSPPREALHNVSNRRTSSSSIGNKKNSPPSRHN 367
Query: 296 TALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQDDN 409
+ KN K NV D + T++ L++D N
Sbjct: 368 SGQAKNFECKVNVTDAPDATPI---KTVTEEKLLKDGN 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,037
Number of Sequences: 37544
Number of extensions: 314718
Number of successful extensions: 1036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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