Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_F22
(884 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 109 9e-23
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 102 1e-20
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 78 3e-13
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 3e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 50 1e-04
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ... 49 2e-04
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 47 7e-04
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 42 0.021
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 42 0.021
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.084
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 38 0.45
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.5
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.5
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 109 bits (262), Expect = 9e-23
Identities = 70/136 (51%), Positives = 81/136 (59%)
Frame = +1
Query: 319 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 498
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76
Query: 499 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLXSSLXALSXFRPLPX 678
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL + AL F P
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCAL-LFLP--- 129
Query: 679 YXIPVRLSPFGKRGAF 726
+ +PV +G+ +F
Sbjct: 130 FGLPVSFRCYGRGFSF 145
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 102 bits (244), Expect = 1e-20
Identities = 65/129 (50%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Frame = +1
Query: 487 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLXSSLXALSXFR 666
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL + AL FR
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCAL-LFR 60
Query: 667 PLPXYXIPVRLSPFGKRGAFS*LTLXVSQFGV--XSFAPSWGCVHEPPXQPDRCALSGNY 840
P +P PF R A+ L V SFAPSW PP P
Sbjct: 61 PC---RLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTI 117
Query: 841 RLESTRVXT 867
L TR T
Sbjct: 118 VLSPTRKDT 126
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 78.2 bits (184), Expect = 3e-13
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +1
Query: 505 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLXSSLXAL 654
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL + AL
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCAL 93
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -3
Query: 495 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 382
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 295 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 462
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 56.0 bits (129), Expect = 1e-06
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +2
Query: 680 TGYLSAFLPSGSVALSHSSRCXYLSSV 760
TGYLSAFLPSGSVALSHSSRC YLSSV
Sbjct: 11 TGYLSAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 49.6 bits (113), Expect = 1e-04
Identities = 30/52 (57%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 698 FLPSGSVALSHSSRCXYLSSVXVRSLQAG-AVCTNPPXSPTAAPYPVTIVLS 850
F +GSVALSHSS S RS AV NPP SPTAAPYPVT+ LS
Sbjct: 61 FSLAGSVALSHSSHSGI--SARCRSFAPSWAVSKNPPFSPTAAPYPVTVHLS 110
>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
cellular organisms|Rep: Uncharacterized 9.4 kDa protein
- Escherichia coli
Length = 84
Score = 48.8 bits (111), Expect = 2e-04
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = +1
Query: 790 VHEPPXQPDRCALSGNYRLESTRVXTXYPP 879
+HEPP QPDRCALSGNYRLES V P
Sbjct: 1 MHEPPVQPDRCALSGNYRLESNPVRHDLSP 30
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 46.8 bits (106), Expect = 7e-04
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +1
Query: 394 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 567
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 568 IDAQVRGGETRQDYKDTRRFPLXSSLXAL 654
I Q + +T+ +YK T FPL S +L
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSL 110
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 414 HSKAVIRLSTESGDNAGKNM 473
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 41.9 bits (94), Expect = 0.021
Identities = 26/60 (43%), Positives = 32/60 (53%)
Frame = -1
Query: 758 PN*DTYSVSYEKAPRFPKGERRTGIX*XGRGRXQESAXRELXRGKRLVSL*SCRVSPPLT 579
P+ DT SVSYEKAPRFPKG++ + +GR + A K SL PPLT
Sbjct: 41 PSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRR-AHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 41.9 bits (94), Expect = 0.021
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +2
Query: 221 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 343
+++LT L RF V +ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.084
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 365 ERGSGRAPNTQTASPRALADSLMQ 294
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 37.5 bits (83), Expect = 0.45
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 106 MIRYIDEFGQTTTRMQ 153
MIRYIDEFGQTTTRMQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 504 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 382
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.5
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -3
Query: 255 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 91
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,675,388
Number of Sequences: 1657284
Number of extensions: 14801474
Number of successful extensions: 34793
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 33433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34779
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -