Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F21
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   1.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   4.8  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.3  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 450 CGKSRMYFCYVCFIPVPA---LEGKIPYCKLPIKV 545
           CGK RMY  +VC  P  A    + +IP CK P++V
Sbjct: 731 CGKRRMYCEHVCQSPCHAGHPCDERIP-CKAPLEV 764


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 715  LAQILPQLQETTKQPFPSVG*SGISGYVYTVTSRGARTAAWAA 587
            L  +LP++ + T  P P +  S IS  +Y   + G+R   + A
Sbjct: 1716 LEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLA 1758


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 435  VLAHVCGKSRMYFCYVCFIPVPALEG-KIPYCKL 533
            +L H  G    Y   + F+P P LEG K+P  K+
Sbjct: 1366 ILEHEMGLYLSYLVAIGFLPKPTLEGKKLPEVKI 1399


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 238  IVMFKWCYKINNLT 279
            ++++KWC  INNLT
Sbjct: 973  LLVYKWCQGINNLT 986


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,861
Number of Sequences: 5004
Number of extensions: 63038
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)