Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F21
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    71   1e-12
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    35   0.090

>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/74 (43%), Positives = 43/74 (58%)
 Frame = +3

Query: 450 CGKSRMYFCYVCFIPVPALEGKIPYCKLPIKVDIIKHKGEINGKSTAAHAAVLAPRDVTV 629
           C  +R YFCY C  P+P +    P  KLP  VDI+KH  E N KS+A H  ++AP    V
Sbjct: 350 CKSNRKYFCYDCRTPMPGVF--TPTVKLPCAVDIVKHPMEKNSKSSALHCKIVAPDQTRV 407

Query: 630 YTYPDIPDYPTDGK 671
           + YP++ DY  D +
Sbjct: 408 FDYPNVHDYSQDSE 421


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 565 ERLMVKALQPMLLFLLHGMSQCTHIQIFQIILLMEKVVLLFPGAEAKSVRDLSINNKISL 744
           +R   K L P  +FL    S CT   IF I+ L   ++L+F    A S R L+++   S 
Sbjct: 37  DRTYSKYLLPNSIFLYKRSSTCTRTYIFVILRLSSIILLVFSIISASSARFLTVDTLFSS 96

Query: 745 HTQKL 759
               L
Sbjct: 97  RLDNL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,383
Number of Sequences: 27780
Number of extensions: 345569
Number of successful extensions: 788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)