Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F20
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    31   0.17 
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    29   0.88 
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    29   0.88 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   2.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   6.2  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 246 KQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQXSGTSRPVPLAKSNTFDLGNV 425
           ++Q   +T      DFS   K   +     L+AF K L+ S T          TFD  N+
Sbjct: 97  EEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDSENM 156

Query: 426 G 428
           G
Sbjct: 157 G 157


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 402 NTFDLGNVGTLPQLGDANGKAKEALEQSRQNIERTAEEL 518
           N F+ G V T    G  N  A + +  + + I+RTA+EL
Sbjct: 58  NVFEKGGVNTSIVQGKLNQDAVQRMRANHEGIDRTAKEL 96


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +3

Query: 279 DAQDFSKAW----KDGSESVLQQLNAFAKSLQXSGTSRPVPLAKSNTF--DLGNVGTLPQ 440
           DAQD S++     +   E+VLQ LNA  K       S  + L KS T   +   +   P 
Sbjct: 177 DAQDLSRSTPSPLRSAMENVLQSLNAMGKKSFSRANSPLLRLTKSTTTSKETDFIPVPPA 236

Query: 441 LGDANGKAKEALEQSRQNIERTAEELR 521
            G  +  ++  L+ S  N  +    L+
Sbjct: 237 HGSTSMTSRSKLDDSTDNSSKPRTSLQ 263


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 528 GPCGAPRPCARCSASTVPKPPWPCRSRLRAVEESQHY 418
           GP GAPR C  C    +P      R  +R + +  HY
Sbjct: 107 GPNGAPRMCGTCKC-WLPDRSHHSRVSMRCIRKFDHY 142


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 525 PCGAPRPCAR-CSASTVPKPPWPCRSRLRAVEESQH 421
           P  APR   +  S + VP PP   +S + + E++QH
Sbjct: 464 PVSAPRLSGKSASRNHVPSPPKGTKSPMASSEQAQH 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,154
Number of Sequences: 5004
Number of extensions: 41237
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)