Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F20
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16...    30   2.8  
03_05_0373 + 23581812-23583293                                         29   3.8  
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    29   5.0  
08_01_0680 - 5958066-5960253,5960707-5961503                           29   6.6  
05_06_0007 - 24821841-24822055,24823137-24823358,24823455-24823695     29   6.6  
01_05_0453 + 22375253-22375513,22376560-22376655,22376749-223768...    29   6.6  
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199...    28   8.7  

>08_01_0022 -
           163512-163817,165963-166032,166074-166151,166399-166439,
           166830-166880,166997-167065,167924-168019,169217-169328,
           169629-169774,169965-170015,170171-170281,170378-170447,
           172496-172935
          Length = 546

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -3

Query: 487 LDCSKASLALPF-ASPSCGRVPTLPRSNVFDLAKGTGRDVPLXWRLLAKALSCCSTDSEP 311
           L+  K  + LP  AS     +  LP+  +FDL      DV L WR+L     C    + P
Sbjct: 42  LELEKEEVPLPDDASAFVHHLSRLPKRYLFDLGVDRVDDVLLHWRILT---HCAHPQNRP 98

Query: 310 SFQA 299
            F A
Sbjct: 99  VFHA 102


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 531 GGPCGAPRPCARCSASTVPKPPW 463
           GG   A    +RCSAST PK PW
Sbjct: 56  GGYGSAASSPSRCSASTPPKSPW 78


>04_04_1212 -
           31786063-31786195,31786275-31786398,31786486-31786597,
           31786691-31786822,31786929-31787111,31787351-31787479,
           31787618-31787788,31788142-31788244,31788628-31788737,
           31789158-31789265,31789337-31789512,31790082-31790352,
           31790524-31790738,31791042-31792574,31792665-31792728,
           31793171-31793251
          Length = 1214

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 366 SGTSRPVPLAKSNTFDLGNVGTLP-QLGDANGK-AKEALEQSRQNIERTAE 512
           S T  P P  +S+   +G  GT    LG +NGK + EA EQ+  N+E ++E
Sbjct: 68  SRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQT-SNVEESSE 117


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 110 CRETECGGDANQDCKHRGVCQNLKE---FHIXVESVG 9
           C E  CGGD +  C   GV  NL++   F+I +E  G
Sbjct: 833 CLEFFCGGDISHLCFEAGVMPNLRKIILFYIDIEWSG 869


>05_06_0007 - 24821841-24822055,24823137-24823358,24823455-24823695
          Length = 225

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 415 RSNVFDLAKGTGRDVPLXWRLLAKALSCCSTDSEPSFQA--LLKSC 284
           R+N+ D       DV L W    K   C STD    F A  +LK+C
Sbjct: 120 RNNIADKLLNNSLDVQLGWLEHLKPSICNSTDEANGFAAGGILKAC 165


>01_05_0453 +
           22375253-22375513,22376560-22376655,22376749-22376823,
           22376907-22377019,22377530-22377620
          Length = 211

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 564 RRAVAFFSTXRGGPCGAPRPCARCSASTVPKPPWPCRSRLRAVEESQHYLGR 409
           RRA +       G     +  AR S +  P PP PC S     +E  H+LG+
Sbjct: 41  RRAASSAPPRPAGVLDLDQGDARASDTVAPSPPSPCES-----QEQPHHLGK 87


>01_05_0422 -
           22018579-22018698,22019548-22019644,22019744-22019908,
           22022274-22022339,22022441-22022540,22022662-22023304
          Length = 396

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 36  FLKILTHSSVFAVLVRISSALSLSTVHHGRQVRSSLRLHRSGPRSDGA 179
           F  +L + +   V++ + ++ S S  H GR +   L+LH   P   GA
Sbjct: 15  FSALLLYVTFALVILLLLTSYSPSIPHRGRSLHRRLKLHPRNPSLSGA 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,534
Number of Sequences: 37544
Number of extensions: 335539
Number of successful extensions: 1387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)