Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F20
         (885 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK092577-1|BAC03917.1|  142|Homo sapiens oA ligase form XL-III. ...    33   1.4  
AB208784-1|BAD92021.1|  222|Homo sapiens zinc finger protein 76 ...    31   5.6  
AL834486-1|CAD39144.1|  568|Homo sapiens hypothetical protein pr...    30   9.7  

>AK092577-1|BAC03917.1|  142|Homo sapiens oA ligase form XL-III.
           protein.
          Length = 142

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 582 AACSFSRRAVAFFSTXRGGPCGAPRPCARCSASTVPKPPWPCRS 451
           +AC++    +   +  R G  GA  PC   +A T   PPWP  S
Sbjct: 14  SACAWPMAPMGALAAWRSGMAGAGAPCV-MTAGTCAMPPWPAGS 56


>AB208784-1|BAD92021.1|  222|Homo sapiens zinc finger protein 76
           (expressed in testis) variant protein.
          Length = 222

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 588 CTAACSFSRRAVAFFSTXRGGPCGAPRPCARCSASTVPKPPWPCRS 451
           C AA + S    A  ST       +P P A  +  T   PPWPC S
Sbjct: 138 CQAAGNASPSTRACISTTWCTHTASPTPAAPAARPTGRPPPWPCTS 183


>AL834486-1|CAD39144.1|  568|Homo sapiens hypothetical protein
           protein.
          Length = 568

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -3

Query: 517 SSSAVRSMFCLDCSKASLA-LPFASPSCGRVPTLPRSNVFDLAKGTGRDVPLXWRLLAKA 341
           SSS+  S F LD + ASLA LP  S    R P+LP S+   L     +       L A  
Sbjct: 294 SSSSSSSSFSLDAAGASLATLPGGSILQPR-PSLPLSSTMHLGPVVSK------ALSASC 346

Query: 340 LSCCSTDSEPSFQALLKSCASF 275
           L CC   +  +F+ L   C  +
Sbjct: 347 LVCCLCQNPANFKDLGDLCGPY 368


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,144,095
Number of Sequences: 237096
Number of extensions: 1684676
Number of successful extensions: 5933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5932
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)