Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F20
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 190 PDFFKDIEHHTKXVP*DFRNNSLTRSPSQRTHRTSAR 300
           P+  +D+E     +     NN LTR PS R ++   R
Sbjct: 281 PEDLQDLEEPLTTIQ---HNNCLTRIPSTRINKQHTR 314


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 177 HHRSLGQSDAGEENYELGGHDVL 109
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 473 SLLGLAVRVSELWKSP 426
           S++GLA+ +  LW+ P
Sbjct: 31  SVVGLAIGLGNLWRFP 46


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 473 SLLGLAVRVSELWKSP 426
           S++GLA+ +  LW+ P
Sbjct: 84  SVVGLAIGLGNLWRFP 99


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 217 HTKXVP*DFRNNSLTRSPSQRT 282
           H K    D+RNN L+ +  +RT
Sbjct: 423 HAKNTIIDYRNNDLSINEEKRT 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,982
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)