Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F18
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    31   0.30 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.53 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   3.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   3.7  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   6.5  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   8.6  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   8.6  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 373 SMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPNN 239
           S+S  T L  P+   +T S+  + +++  T  +F SSGL SGP N
Sbjct: 548 SVSSETTLVKPS---STSSYIDTTNNVLKTNSSFKSSGLTSGPRN 589


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 412  PETRVNVTGASGNSMSRRTCLDSPTFNTATGSFT-ASCSDMASTCITFNSS 263
            P T  + TG+S +S++  +   S T + AT S T +S S +A+  +T +S+
Sbjct: 964  PSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSST 1014


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 403 RVNV-TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMAST 284
           R NV T ++ N + +   + +PT +T TGS ++  S M +T
Sbjct: 57  RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 249 PDAKPDELNVIQVEAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVS 410
           P +KP + N +  +   LQ + KLP   L VGE       I+ P+  V+ T  S
Sbjct: 355 PVSKPSKPNTLTEDEKPLQ-STKLPGNSLTVGELYQEPKSIQLPELSVSRTTYS 407


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 153 LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 299
           L +S ++  +  +  AE     KL+  Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 421 PRXPETRVNVTGASGNSMSRRTCLDSPTFNTATG 320
           PR    RV + G S  SMS  T +DS  FN A+G
Sbjct: 425 PRDVAERVAL-GLSKPSMSSDTMIDSRLFNQASG 457


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 158 IITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTG 286
           +   V+D+  + K R+P +Q+ R   +     C+ + IKC+ G
Sbjct: 12  LFADVKDLERKKKRRVPPEQRRRVFRAC--KHCRQKKIKCNGG 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,033
Number of Sequences: 5004
Number of extensions: 34726
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)