Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F18
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    31   1.1  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 376 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 251
           N+  +RTC   P+  TA+ S TAS S   STC ++N  SS L S
Sbjct: 87  NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 183 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 305
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical
           protein M151.4 protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = -1

Query: 448 EMVSN*VYWPRXPETRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN 269
           EM+ + V+W +   +  +V  +   S  R +  ++P    AT S  ++ S+ AS+    N
Sbjct: 474 EMIIDDVFWQQPSSSTSHVYSSFAFSTPRSSSQNAPVQEEAT-SHQSTSSEPASSAPNSN 532

Query: 268 SSGLASGPNNA 236
           SS  +SG + A
Sbjct: 533 SSPNSSGMSPA 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,206
Number of Sequences: 27780
Number of extensions: 202223
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)