Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F17
         (1000 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   146   3e-36
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   146   3e-36
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    42   1e-04
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   9.5  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  146 bits (355), Expect = 3e-36
 Identities = 67/108 (62%), Positives = 88/108 (81%)
 Frame = +1

Query: 91  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 270
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 271 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXT 414
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L T
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALIT 108



 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 28/32 (87%), Positives = 29/32 (90%)
 Frame = +2

Query: 416 YDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
           YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 109 YDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  146 bits (355), Expect = 3e-36
 Identities = 67/108 (62%), Positives = 88/108 (81%)
 Frame = +1

Query: 91  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 270
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 271 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXT 414
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L T
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALIT 108



 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 28/32 (87%), Positives = 29/32 (90%)
 Frame = +2

Query: 416 YDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
           YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 109 YDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 26/80 (32%), Positives = 39/80 (48%)
 Frame = +1

Query: 112 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 291
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 292 GGGHVAQVYAIRQAISKALI 351
           GGG   Q  A+  AISK+LI
Sbjct: 71  GGGPTGQSGAVHAAISKSLI 90


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 321 YQTSYFKGSDRLLPEICRRSLKEGNQRHPXYNTIG 425
           Y   YF G D   PE C        QRH   N  G
Sbjct: 42  YHEPYFDGLDSAFPETCEIQQVHLLQRHGSRNPTG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,094
Number of Sequences: 5004
Number of extensions: 55062
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)