Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F17
         (1000 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   165   4e-41
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    30   2.2  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    30   2.2  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  165 bits (401), Expect = 4e-41
 Identities = 70/105 (66%), Positives = 95/105 (90%)
 Frame = +1

Query: 91  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 270
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 271 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDI 405
           DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNI 109



 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 31/42 (73%), Positives = 34/42 (80%)
 Frame = +2

Query: 386 RRKSKTS*XQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
           +R+ K     YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 103 KRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 306 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 127
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 126 G 124
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 306 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 127
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 126 G 124
           G
Sbjct: 208 G 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,370
Number of Sequences: 27780
Number of extensions: 333886
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)