Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_F14
(939 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 1.5
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 27 1.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 27 1.9
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 27 2.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 24 4.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.3
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 26.6 bits (56), Expect(2) = 1.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 689 PPPPPPPP 712
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 22.6 bits (46), Expect(2) = 1.5
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 521 PPPPPXRGXXKXXXPXP 571
PPPPP G P P
Sbjct: 297 PPPPPSSGMWPPPPPPP 313
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 26.6 bits (56), Expect(2) = 1.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 689 PPPPPPPP 712
PPPPPPPP
Sbjct: 297 PPPPPPPP 304
Score = 22.6 bits (46), Expect(2) = 1.5
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 521 PPPPPXRGXXKXXXPXP 571
PPPPP G P P
Sbjct: 287 PPPPPSSGMWPPPPPPP 303
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 26.6 bits (56), Expect(2) = 1.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 689 PPPPPPPP 712
PPPPPPPP
Sbjct: 578 PPPPPPPP 585
Score = 22.2 bits (45), Expect(2) = 1.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 521 PPPPPXRGXXKXXXPXP 571
PPPPP G P P
Sbjct: 538 PPPPPPVGMANGGPPPP 554
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 26.6 bits (56), Expect(2) = 1.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 689 PPPPPPPP 712
PPPPPPPP
Sbjct: 505 PPPPPPPP 512
Score = 22.2 bits (45), Expect(2) = 1.9
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 659 PXXXXXEXXXPPPPPPP 709
P E PPPPPP
Sbjct: 478 PSPQPAEVSKSPPPPPP 494
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 26.6 bits (56), Expect(2) = 1.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 689 PPPPPPPP 712
PPPPPPPP
Sbjct: 512 PPPPPPPP 519
Score = 22.2 bits (45), Expect(2) = 1.9
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 659 PXXXXXEXXXPPPPPPP 709
P E PPPPPP
Sbjct: 485 PSPQPAEVSKSPPPPPP 501
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 26.6 bits (56), Expect(2) = 2.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 689 PPPPPPPP 712
PPPPPPPP
Sbjct: 53 PPPPPPPP 60
Score = 21.8 bits (44), Expect(2) = 2.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 521 PPPPPXRGXXKXXXPXP 571
PPPPP G P P
Sbjct: 41 PPPPPMCGCAPPPPPPP 57
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 689 PPPPPPP 709
PPPPPPP
Sbjct: 122 PPPPPPP 128
Score = 23.8 bits (49), Expect(2) = 8.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 689 PPPPPPP 709
PPPPPPP
Sbjct: 138 PPPPPPP 144
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 692 PPPPPPP 712
PPPPPPP
Sbjct: 138 PPPPPPP 144
Score = 22.6 bits (46), Expect(2) = 8.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 659 PXXXXXEXXXPPPPPP 706
P E PPPPPP
Sbjct: 113 PQHGDHEASPPPPPPP 128
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +2
Query: 521 PPPPPXRGXXKXXXPXPXXXXXXXXSXXXXXXXXXXXXXXXXXXXXPXXXXXEXXXPPPP 700
PPPPP P P P PPPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 701 PPPP 712
PPPP
Sbjct: 773 PPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +2
Query: 521 PPPPPXRGXXKXXXPXPXXXXXXXXSXXXXXXXXXXXXXXXXXXXXPXXXXXEXXXPPPP 700
PPPPP P P P PPPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 701 PPPP 712
PPPP
Sbjct: 773 PPPP 776
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +2
Query: 521 PPPPPXRGXXKXXXPXPXXXXXXXXSXXXXXXXXXXXXXXXXXXXXPXXXXXEXXXPPPP 700
PPPPP P P P PPPP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Query: 701 PPPP 712
PPPP
Sbjct: 356 PPPP 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,804
Number of Sequences: 27780
Number of extensions: 217213
Number of successful extensions: 5974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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