Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F11
         (902 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.61 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   4.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   4.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   4.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   4.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   7.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   7.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   10.0 

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 408 NPPFSPTAAPYPVTIVLSPTR 470
           NPP +      PV +++SPTR
Sbjct: 225 NPPNTENNCAQPVVVIMSPTR 245


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
 Frame = +3

Query: 102 PAKVPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR-QDYKDTRRFPLEAPSCAL-L 275
           P  V G  K P C     G+ PL        Q +GG  R Q       F   +  C +  
Sbjct: 144 PENVDGCQKHPLCNDDPNGNVPLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRCVVPP 203

Query: 276 FRPCRLPDTCPP 311
              C +P T PP
Sbjct: 204 TEDCDVPSTIPP 215


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 387 PSWAVCTNPPFSPTAAPYPVTIVLSPT 467
           P+  +C N P  P   P P+  +  PT
Sbjct: 166 PTGFLCNNYPPLPQVPPLPLPPIFPPT 192


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 503 WLLPVAISRVLPGWTQD 453
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 503 WLLPVAISRVLPGWTQD 453
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 503 WLLPVAISRVLPGWTQD 453
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 503 WLLPVAISRVLPGWTQD 453
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 483 YRHWQQPL 506
           YRHWQ PL
Sbjct: 344 YRHWQIPL 351


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 670 FVCRIKSYQLFFPKVTGFSRAQIPNT 593
           +V RIK  Q     +TG S+ Q+ N+
Sbjct: 469 YVSRIKPNQKHIYYITGESKEQVANS 494


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 230 RYQAFPPGSSLVRSPVPTLPLTGY 301
           RY  +   +S++  P P +P  G+
Sbjct: 225 RYNPYLQAASMLPKPTPLVPQQGF 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,524
Number of Sequences: 336
Number of extensions: 4458
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)