Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F11
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.31 
01_06_0552 + 30166699-30166797,30167094-30167562,30171536-301718...    31   1.3  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.7  
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    29   3.8  
12_01_0816 + 7502669-7503145                                           29   5.1  
08_01_0156 - 1233431-1233925                                           29   6.7  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.8  
03_04_0061 - 16949038-16950006                                         28   8.8  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -2

Query: 418 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 239
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 238 LVS 230
             S
Sbjct: 137 RAS 139


>01_06_0552 +
           30166699-30166797,30167094-30167562,30171536-30171879,
           30172006-30172302
          Length = 402

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -2

Query: 652 SYQLFFPKVTGFSRAQIPNTVLSSVAVVRPPLQELCSTAYIPRSANPVTSGCC 494
           S+ + FP  TGFSR  +P     +  V+R P  ++ S  YIP + + ++ G C
Sbjct: 301 SFMMRFP--TGFSRQHLPRE--RTDVVLRDPGGKVWSVLYIPNTRDRLSRGWC 349


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 138 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 296
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +2

Query: 248 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCVHEPPVQ 421
           P S+ + +PVPTLP++   + F   G    S H +  R Y        S  G V   P  
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341

Query: 422 PDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYV 535
           P     + +Y   ++     + P  A     +   R+V
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHV 379


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 437 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 306
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 391 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 218
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 217 RVSPPLT 197
           R SP ++
Sbjct: 149 RASPTVS 155


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 346 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 245
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 220 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 336
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,113,870
Number of Sequences: 37544
Number of extensions: 605152
Number of successful extensions: 1974
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)