Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F10
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    95   9e-21
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    47   4e-06
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   1.1  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    29   1.1  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   6.1  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   8.1  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   8.1  

>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 95.5 bits (227), Expect = 9e-21
 Identities = 41/90 (45%), Positives = 62/90 (68%)
 Frame = +1

Query: 304 ASCTPRYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVI 483
           A   P + S+ A+E+  K DDT+WLTY++V +  +++EY+S  I+ + P+YWLLK IF+I
Sbjct: 64  AFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFLI 123

Query: 484 WCYLPTEYNGSLVIYYRIIRPYYQKHHGRI 573
           W  LP ++NG+ +IY  +IRPY   H  RI
Sbjct: 124 WLALP-KFNGATIIYRHLIRPYITPHVIRI 152



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 126 YKDNIEQSLNDKSKPWTKYFEL--AEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNS 299
           ++  ++Q++ D       + +L   E+  GV++LY+FL       L+L   +G  L+ N 
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNL 62

Query: 300 IGFVYPA 320
           + F  PA
Sbjct: 63  LAFAMPA 69


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 25/90 (27%), Positives = 39/90 (43%)
 Frame = +1

Query: 355 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYR 534
           +++  + + YW VY C +  E      + W P Y   K +F +W   P    G+  IY  
Sbjct: 97  EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYAS 155

Query: 535 IIRPYYQKHHGRIDDMANTASRLVADTIRK 624
            I P+   H   I+   N   +LV  T R+
Sbjct: 156 YISPFLSDHKAAIN---NFLEKLVQFTTRQ 182


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 26   RESLRFDLPAQLPICVHIRLATKRPHNGIQITRV*RQHRTKSERQKQAMDEIF*TSRTKG 205
            R  L+F +PA +P+  HIRL   +P + I + ++   +  ++   +    E+F    +K 
Sbjct: 3396 RRCLKFYIPAVIPLSSHIRLLEDQP-SSITLQKIYEIYSERNNFSRDDPKELFTNELSKH 3454

Query: 206  RRE 214
              E
Sbjct: 3455 MME 3457


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 280 APKPNTKYKPVNATKPKKMYNLFTPTFCSASS 185
           A K  +KYKP+N  KP  + +   PT  S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 147 SLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVF 269
           +++ K+K  TKY      ++  N ++I+LG+  FT + LV+
Sbjct: 307 NMSYKAKLSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVY 347


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 81  G*PLKDRTMASKLQEYKDNIEQSLNDKSKPW 173
           G P   +   + L EYK   E+S+ND S  W
Sbjct: 20  GDPTVPKPNIASLDEYKRMYEESINDPSTFW 50


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 400 CFSIVEYFSDFIVGWFPLYWLLKC 471
           C  ++EYF  F    + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,269
Number of Sequences: 5004
Number of extensions: 75891
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)