Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_F08
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.33
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.33
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.33
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.1
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 29 5.4
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 29 5.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 5.4
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 5.4
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 28 7.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 9.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = -1
Query: 404 PPXPXXXXXKKXGGPXSXKXFXXGXPPXXXXPXPXGLXGPPPXXFFFGFXXPPPXXVPN 228
PP P GGP G PP P P G G PP G P +P+
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 802
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = -1
Query: 404 PPXPXXXXXKKXGGPXSXKXFXXGXPPXXXXPXPXGLXGPPPXXFFFGFXXPPPXXVPN 228
PP P GGP G PP P P G G PP G P +P+
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 802
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = -1
Query: 404 PPXPXXXXXKKXGGPXSXKXFXXGXPPXXXXPXPXGLXGPPPXXFFFGFXXPPPXXVPN 228
PP P GGP G PP P P G G PP G P +P+
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 385
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = -1
Query: 404 PPXPXXXXXKKXGGPXSXKXFXXGXPPXXXXPXPXGLXGPPPXXFFF--GFXXPPPXXVP 231
PP P + G P P P G+ PPP + G PPP P
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
Query: 230 NXG 222
+ G
Sbjct: 357 SAG 359
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = -1
Query: 404 PPXPXXXXXKKXGGPXSXKXFXXGXPPXXXXPXPXGLXGPPPXXFFF--GFXXPPPXXVP 231
PP P + G P P P G+ PPP + G PPP P
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
Query: 230 NXG 222
+ G
Sbjct: 367 SAG 369
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Frame = -1
Query: 401 PXPXXXXXKKXGGPXSXKXFXXGXPPXXXX----PXPXGLXGPPPXXFFFGFXXPPP 243
P P GP F G PP P P GL PPP ++ PPP
Sbjct: 55 PPPSLPPSTMPPGPHGMP-FMGGPPPHHQYHLQYPPPHGLGPPPPPPHYYTQPPPPP 110
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +1
Query: 229 LGTXXGGGXXKPKKNXXG-GGPXNPXGXGXXSXGGXP 336
LGT G G N G GGP NP G G G P
Sbjct: 112 LGTPGGPGTPGGPGNPGGLGGPGNPGGPGTPGGPGTP 148
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 329 PPXXXXPXPXGLXGPPPXXFFFGFXXPPPXXVP 231
PP P P PPP F G PPP P
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPP 323
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 329 PPXXXXPXPXGLXGPPPXXFFFGFXXPPPXXVP 231
PP P P PPP F G PPP P
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPP 323
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 335 GXPPXXXXPXPXGLXGPPPXXFFFGFXXPPP 243
G PP P G PPP G+ PPP
Sbjct: 34 GPPPACGNPCGGGFGPPPPPFGPVGYALPPP 64
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -1
Query: 335 GXPPXXXX--PXPXGLXGPPPXXFFFGFXXPPPXXVPNXG 222
G PP P P G+ G PP G PPP +P G
Sbjct: 697 GVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMG 736
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,938,491
Number of Sequences: 27780
Number of extensions: 139790
Number of successful extensions: 381
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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