Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F07
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.72 
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           29   3.8  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   6.7  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   6.7  

>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 543  GGGXPPPXXGEXXXPXXXGXXXKKXXXXXPPKPPPXXK 656
            GG  PPP  G    P   G          PP PPP  K
Sbjct: 960  GGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPPMRK 997



 Score = 31.5 bits (68), Expect = 0.95
 Identities = 19/47 (40%), Positives = 19/47 (40%)
 Frame = -3

Query: 600  PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGG 460
            PP       PP  GG  PPPP    P       GGGA    P  PGG
Sbjct: 936  PPGGSAPSQPPPPGGNAPPPP--PPPGGSAPPPGGGA-PPLPPPPGG 979



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 544  GGXXPPPXGGXXXPPXXXGXXKKKXXGXXPXNPPPXXK 657
            GG  PPP GG    P   G          P  PPP  K
Sbjct: 960  GGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPPMRK 997



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 556  PPPXGGXXXPPXXXGXXKKKXXGXXPXNPPP 648
            PPP G    PP   G       G  P  PPP
Sbjct: 946  PPPGGNAPPPPPPPGGSAPPPGGGAPPLPPP 976



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 600  PPXXXGXXXPPXXGGVXPPPPXXXXP 523
            PP       PP  GG  PPPP    P
Sbjct: 965  PPGGGAPPLPPPPGGSAPPPPPPPPP 990


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 597 PXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXP 475
           P   G   PP  GG+ PPPP         GGG  G  K  P
Sbjct: 647 PFFGGIPPPPPGGGMFPPPPPP-----PPGGGVPGPPKPPP 682



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 587 GGXXFPPXGGGXXPPPP 537
           GG   PP GGG  PPPP
Sbjct: 650 GGIPPPPPGGGMFPPPP 666


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -3

Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
           PP   G   PP   G+ P PP    P    G  G       P  PGG G
Sbjct: 114 PPGPPGPQMPPGPPGL-PGPPGPAGPPGTNGELGPPGDVGPPGNPGGPG 161


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 556 PPPXGGXXXPPXXXGXXKKKXXGXXPXNPPP 648
           PPP GG   PP           G  P  PPP
Sbjct: 368 PPPVGGPPPPPPPIEGRPPSSLGNPPPPPPP 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.150    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,499
Number of Sequences: 59808
Number of extensions: 132956
Number of successful extensions: 1026
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)