Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_F07
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 41 0.001
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 41 0.001
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 34 0.16
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 34 0.16
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 33 0.21
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.21
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 33 0.21
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 30 1.9
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 30 1.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 30 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 30 2.6
U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific ... 29 3.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.8
AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical ... 28 7.8
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 25 8.9
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 25 9.2
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
PP PP G PPPP P GGGGG P PG GG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
PP PP G PPPP P GGGGG P PG GG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGG 493
PP G PP GG+ PPP P G GG G
Sbjct: 183 PPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 218
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
PP G PP GG PP G GG G P PGG G
Sbjct: 174 PPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGG----PGGPGGPG 218
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGG 493
PP G PP GG+ PPP P G GG G
Sbjct: 463 PPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 498
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
PP G PP GG PP G GG G P PGG G
Sbjct: 454 PPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGG----PGGPGGPG 498
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGG 496
PP PP G PPPP P GGGGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = -3
Query: 609 FXXPPXXXGXXXPPXX-GGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGGXF 448
F PP G P GG PPPP G GG P PGG G +
Sbjct: 390 FAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAY 444
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGG 496
PP PP G PPPP P GGGGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 561 GGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
GG PPPP GGGGGG GGGG
Sbjct: 50 GGCAPPPPPPACGG-GCGGGGGGCGGGGGGCGGGGG 84
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 561 GGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
GG PPPP P GG GGG GGGG
Sbjct: 107 GGCAPPPP----PPACGGGCGGGGGGCGGGCGGGGG 138
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 612 FFXXPPXXXGXXXPPXX-GGVXPPPP 538
FF PP G PP GG+ PPPP
Sbjct: 63 FFIPPPVPNGFIPPPPGPGGIPPPPP 88
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXG-----GGGGGAXKXXPXXPGGG 457
PP PP GG PPPP P G GG P P GG
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGG 505
PP G PP G PPPP P GG
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXG-----GGGGGAXKXXPXXPGGG 457
PP PP GG PPPP P G GG P P GG
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGG 505
PP G PP G PPPP P GG
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXG-----GGGGGAXKXXPXXPGGG 457
PP PP GG PPPP P G GG P P GG
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGG 505
PP G PP G PPPP P GG
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = -3
Query: 609 FXXPPXXXGXXXPPXXGGVXP----PPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
F PP PP GG P P F GGGGGG+ G GG
Sbjct: 104 FNMPPMMVPPGQPPFYGGNQPNHHHQQPSFAPSPFSMGGGGGGSQGGPHEQHGPGG 159
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = -3
Query: 609 FXXPPXXXGXXXPPXXGGVXP----PPPXXXXPXFXXGGGGGGAXKXXPXXPGGGG 454
F PP PP GG P P F GGGGGG+ G GG
Sbjct: 186 FNMPPMMVPPGQPPFYGGNQPNHHHQQPSFAPSPFSMGGGGGGSQGGPHEQHGPGG 241
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 561 GGVXPPPPXXXXPXFXXGGG-GGGAXKXXPXXPGGGG 454
GG PPP GGG GGG P P GGG
Sbjct: 46 GGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 561 GGVXPPPPXXXXPXFXXGGG-GGGAXKXXPXXPGGGG 454
GG PPP GGG GGG P P GGG
Sbjct: 46 GGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -3
Query: 615 FFFXXPPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGG 460
F F PP G P G PP P GGG G A P P G
Sbjct: 171 FCFDCPPGPAGPAGGPGPAG--PPGPAGADGNTPSGGGEGPAGPPGPPGPAG 220
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 547 GXXPPPXGGXXXPPXXXGXXKKKXXGXXPXNPPP 648
G PPP G PP G G P PPP
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/64 (25%), Positives = 17/64 (26%)
Frame = +3
Query: 456 PPPXXXGXXFXGXXXXXXXXKXXAXGXXGGGGXPPPXXGEXXXPXXXGXXXKKXXXXXPP 635
PPP G + G PPP G P G PP
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 636 KPPP 647
PPP
Sbjct: 300 PPPP 303
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGG 460
PP G PP GG PPP P G P GG
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 319
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 547 GXXPPPXGGXXXPPXXXGXXKKKXXGXXPXNPPP 648
G PPP G PP G G P PPP
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/64 (25%), Positives = 17/64 (26%)
Frame = +3
Query: 456 PPPXXXGXXFXGXXXXXXXXKXXAXGXXGGGGXPPPXXGEXXXPXXXGXXXKKXXXXXPP 635
PPP G + G PPP G P G PP
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 636 KPPP 647
PPP
Sbjct: 321 PPPP 324
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGG 460
PP G PP GG PPP P G P GG
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 340
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 547 GXXPPPXGGXXXPPXXXGXXKKKXXGXXPXNPPP 648
G PPP G PP G G P PPP
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/64 (25%), Positives = 17/64 (26%)
Frame = +3
Query: 456 PPPXXXGXXFXGXXXXXXXXKXXAXGXXGGGGXPPPXXGEXXXPXXXGXXXKKXXXXXPP 635
PPP G + G PPP G P G PP
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 636 KPPP 647
PPP
Sbjct: 306 PPPP 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGAXKXXPXXPGG 460
PP G PP GG PPP P G P GG
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 325
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGA 490
PP P GG PPPP P G GGA
Sbjct: 36 PPPACAPPPAPACGGGAPPPPAYAAPAPSYGAPAGGA 72
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 658 LFXXGGGXGGXXXKXFFXXXPXXXGXXXSPXXGGGXPPPP 539
LF GG GG P +P GGG PPPP
Sbjct: 18 LFPSAGGGGGGCGCGA-PPPPPACAPPPAPACGGGAPPPP 56
>U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific
family, class qprotein 2 protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -3
Query: 645 GGVXGXXXXXFFFXXPPXXXGXXXPPXXGGVXPPPPXXXXPXFXXGGGGGGA 490
G G F P G GG PPP GGGGGGA
Sbjct: 11 GSNTGAQSAYFGVGGGPAGGGGGASKVGGGAAPPPGTSVYMGAGGGGGGGGA 62
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPP 538
PP PP GG+ PPPP
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 600 PPXXXGXXXPPXXGGVXPPPP 538
PP PP GG+ PPPP
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPP 348
>AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical
protein Y59A8B.10 protein.
Length = 413
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 525 PXFXXGGGGGGAXKXXPXXPGGGG 454
P F GGGGGG GGGG
Sbjct: 259 PAFNGGGGGGGGMNVGAAGFGGGG 282
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 25.4 bits (53), Expect(2) = 8.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 573 PPXXGGVXPPPPXXXXPXFXXGGGGGGA 490
P GG PPP GGGGGGA
Sbjct: 274 PSAFGGAPPPPSGSA----MGGGGGGGA 297
Score = 21.0 bits (42), Expect(2) = 8.9
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -3
Query: 510 GGGGGGAXKXXPXXPGGGG 454
GGGGGG GGG
Sbjct: 338 GGGGGGIPGQSVYMGAGGG 356
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 573 PPXXGGVXPPPPXXXXPXFXXGGGGGGA 490
P GG PPP GGGGGGA
Sbjct: 168 PSAFGGAPPPPSGSA----MGGGGGGGA 191
Score = 21.0 bits (42), Expect(2) = 9.2
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -3
Query: 510 GGGGGGAXKXXPXXPGGGG 454
GGGGGG GGG
Sbjct: 232 GGGGGGIPGQSVYMGAGGG 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.150 0.516
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,838,133
Number of Sequences: 27780
Number of extensions: 150623
Number of successful extensions: 1336
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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