Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F06
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    50   6e-07
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    50   6e-07
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   2.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.7  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.2  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   8.2  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
          S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 23/25 (92%), Positives = 23/25 (92%)
 Frame = -2

Query: 91 GKVHGSLARAGKVKGQTPKVEKQLK 17
          GKVHGSLARAGKVK QTPKVEKQ K
Sbjct: 2  GKVHGSLARAGKVKSQTPKVEKQEK 26


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
          S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 23/25 (92%), Positives = 23/25 (92%)
 Frame = -2

Query: 91 GKVHGSLARAGKVKGQTPKVEKQLK 17
          GKVHGSLARAGKVK QTPKVEKQ K
Sbjct: 2  GKVHGSLARAGKVKSQTPKVEKQEK 26


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 374 RDRVECCSSLEQEDL-SGLVDKILQYAVAYQRAIDTRPGRQWP 249
           +D +ECC    QED+ S ++D++  + V  + A ++  GR +P
Sbjct: 672 KDSIECCFWAYQEDVNSSMIDRV-GFIVVDKSASNSSFGRSFP 713


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 692 GEQKQEGKMPQKRE*GRHGNVEYSYSSFFNIIEAFIRVIVS*AD 561
           G+ K+  K    +E   +G  +YSYS+  N++    R  VS  D
Sbjct: 8   GDSKEPPKHGNSKEKPNYGQSQYSYSAMSNLVTQADRRFVSRRD 51


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 364 LSVVPVWNKR-TCQAWLIRFYNMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDED 188
           +S+V VWN+  T     +  +N +  +    T   +V G+E+ GQI+     L++ GD D
Sbjct: 62  MSIVNVWNQSPTSYRDQLLHFNHESDVSIDDTS--EVAGEETFGQIERFEYLLSSDGDGD 119


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 444 VKSAHFLTNRPKSAKSLINQKNRP 373
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 793 ETLKDLTAVEIQFDVTHSCTQLIFSIFYFHQRFWVS 686
           E L+ LTAV +QFD+  + T L+      H  F  S
Sbjct: 219 EYLRRLTAVRLQFDIMKAETMLLCRCDTDHAEFITS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,634,398
Number of Sequences: 5004
Number of extensions: 76290
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)