Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F06
         (881 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p pro...    75   1e-13
AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-P...    75   1e-13
AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-P...    75   1e-13
L35770-1|AAA64525.1|  412|Drosophila melanogaster fringe protein...    31   1.6  
AY070927-1|AAL48549.1|  412|Drosophila melanogaster RE03010p pro...    31   1.6  
AE014296-3445|AAF51658.2|  412|Drosophila melanogaster CG10580-P...    31   1.6  

>AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p
           protein.
          Length = 147

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = -2

Query: 301 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 125
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 16  MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 75

Query: 124 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEKQLKK 14
               L +P+LGGKVHGSLARAGKVKGQTPKVEKQ KK
Sbjct: 76  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKK 112


>AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-PB,
           isoform B protein.
          Length = 132

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = -2

Query: 301 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 125
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 124 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEKQLKK 14
               L +P+LGGKVHGSLARAGKVKGQTPKVEKQ KK
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKK 97


>AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-PA,
           isoform A protein.
          Length = 132

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = -2

Query: 301 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 125
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 124 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEKQLKK 14
               L +P+LGGKVHGSLARAGKVKGQTPKVEKQ KK
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKK 97


>L35770-1|AAA64525.1|  412|Drosophila melanogaster fringe protein
           protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 523 PYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILP-SCFCSPR 696
           P  FI  +TF+   +     + N   ++K + ++  T P R YSL C + P   FC PR
Sbjct: 354 PMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHCQLFPYFSFCPPR 412


>AY070927-1|AAL48549.1|  412|Drosophila melanogaster RE03010p
           protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 523 PYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILP-SCFCSPR 696
           P  FI  +TF+   +     + N   ++K + ++  T P R YSL C + P   FC PR
Sbjct: 354 PMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHCQLFPYFSFCPPR 412


>AE014296-3445|AAF51658.2|  412|Drosophila melanogaster CG10580-PA
           protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 523 PYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILP-SCFCSPR 696
           P  FI  +TF+   +     + N   ++K + ++  T P R YSL C + P   FC PR
Sbjct: 354 PMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHCQLFPYFSFCPPR 412


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,870,433
Number of Sequences: 53049
Number of extensions: 808085
Number of successful extensions: 1826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)