Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F06
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    54   1e-07
Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical pr...    32   0.62 
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c...    28   7.7  
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...    28   7.7  
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph...    28   7.7  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = -2

Query: 100 LLGGKVHGSLARAGKVKGQTPKVEKQLKK 14
           LLGGKVHGSLARAGKV+ QTPKV+KQ KK
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKK 96


>Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical
           protein C38C10.1 protein.
          Length = 374

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 469 KY*RLQFRWHFSGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEEYEYS-TFPCR 645
           KY  L   W     CA NP ++ F N    +        I   I  KKE+YEYS  FP +
Sbjct: 262 KYAYLLIYWIAMSSCAYNPIIYCFANERFRIGFRYVFRWIPV-IDCKKEQYEYSQLFPDK 320

Query: 646 PYSL 657
             S+
Sbjct: 321 MRSM 324


>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
           protein C27A2.1 protein.
          Length = 1076

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 652 SLFCGILPSCFCSPRNAGESKRC*RSV--GCTSG 747
           S+ CGI  +C  SP++ G S+R    +  GCT G
Sbjct: 57  SIICGICLACGGSPKSLGRSERIVEYIRHGCTEG 90


>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division cycle
            related protein14, isoform b protein.
          Length = 1063

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +1

Query: 484  QFRWHFSGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEEYEYS-TFPCRPYSLF 660
            +F  H  GK      L    + + +V  H     +   II K+E+  +  T  C   +  
Sbjct: 844  KFASHLMGKQFEEDKLIH--SAYMFVLNHPEAGAVTGPII-KEEDIPFEETVECSSTTAV 900

Query: 661  CGILPSCFCSPR 696
             GILP CF  PR
Sbjct: 901  NGILPKCFRQPR 912


>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
           protein 1 protein.
          Length = 1845

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 352 PVWNKRTCQAWLIRFYNMQLHIRGQSTHVLDVNGQESIGQIKERI 218
           P+ NK+T Q  +      QLH+ G+    L   G+ESI ++ E I
Sbjct: 563 PMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESIAKLLEHI 607


>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosphatase
            isoform B protein.
          Length = 1063

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +1

Query: 484  QFRWHFSGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEEYEYS-TFPCRPYSLF 660
            +F  H  GK      L    + + +V  H     +   II K+E+  +  T  C   +  
Sbjct: 844  KFASHLMGKQFEEDKLIH--SAYMFVLNHPEAGAVTGPII-KEEDIPFEETVECSSTTAV 900

Query: 661  CGILPSCFCSPR 696
             GILP CF  PR
Sbjct: 901  NGILPKCFRQPR 912


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,254
Number of Sequences: 27780
Number of extensions: 426842
Number of successful extensions: 1017
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)