Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F05
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   3.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   8.4  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 612 KSQEDCF*EQKD---I*KRIYILLKKGHCD 692
           K+Q+D     KD   + K+++ +L +GHCD
Sbjct: 18  KAQDDISKFLKDRPYVQKQLHCILDRGHCD 47


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 324 PLRPPRMKFVTEIWHPNIDKNGDVCISI 407
           PL    +  VT IWH N+    D  I I
Sbjct: 394 PLSSTGLAQVTGIWHSNLTTPDDPDIQI 421


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 541 LAGLSSFGSASIEMTLISIVSTVC 470
           LAG + FGS +I + ++ ++  +C
Sbjct: 192 LAG-TVFGSVAIAIAIVELIGIIC 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,670
Number of Sequences: 438
Number of extensions: 4199
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)