Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F04
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...   128   8e-31
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    29   0.86 
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    28   1.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   4.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   8.1  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score =  128 bits (310), Expect = 8e-31
 Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 2/138 (1%)
 Frame = +1

Query: 301 LDSMKVIAESVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDHAL 480
           ++S+K +AE +GI  L D+ A  +A D+ YR+  +VQ+A KFM HSKR  L+  DI  AL
Sbjct: 8   IESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSAL 67

Query: 481 KIKNNECQYGFIQPDSLPFRFAS--GGGRELHFIEEKEIDLSEILSAPPPKVPLDVSVRA 654
           +  N E  YGF     L F  A+   G   L++++++E+D  +I++AP PKVP ++S  A
Sbjct: 68  RTLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSA 127

Query: 655 HWLSVDGVQPTVPENPPP 708
           HWL+++GVQP +P+NP P
Sbjct: 128 HWLAIEGVQPAIPQNPTP 145


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 685 LVEPHPHLANVHEQIHPMEPLGVVLIESPRDLSLFL---Q*NGVLYL 554
           L+  HP L +V E++    P  V  IE P++L L L   Q  GV +L
Sbjct: 322 LIRQHPELEHVWEKLEEEAPREVKQIEQPKELVLNLLPFQREGVYWL 368


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +1

Query: 616 PPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDPISKLSKPSNKDSAGKP 795
           PPP+  +++   A  L+++ VQPT   +   L+ +           ++ KPSN++  G+ 
Sbjct: 463 PPPESTVEIVSNAPTLAMEDVQPTAASDTMALAPQ-----------EVYKPSNENREGET 511

Query: 796 ICGKAARLKASESVH 840
           I      + ++E  H
Sbjct: 512 ITRSGIAISSTEMDH 526


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 24/104 (23%), Positives = 51/104 (49%)
 Frame = +1

Query: 553 GGRELHFIEEKEIDLSEILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKL 732
           GG E   +E++  DLS++   P  +     S+  +   +  V+P+  E     S+E   L
Sbjct: 41  GGNESVSVEQEIFDLSQLSERPVSETVSKASIPTNINGLSQVKPSALEK----SQEVLSL 96

Query: 733 ESVDPISKLSKPSNKDSAGKPICGKAARLKASESVHVNSLLPMN 864
           + + PI K  +P+ +   G+P    +  L+ + + +V++  P++
Sbjct: 97  QKL-PI-KGRRPAGR--RGRPALNTSNSLERNGTRYVSAEAPIS 136


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 295  LTLDSMKVIAESVGIATLGDDAAKELADDVTYR 393
            +TLD       +  + TL DD   EL DDV  +
Sbjct: 906  VTLDEFSAPLYATWLTTLDDDELSELTDDVVQK 938


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 643  SVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDP 747
            +VRA  +  D + P V ENPPPL K  Q +    P
Sbjct: 1155 AVRAA-MKADKIFPAVHENPPPL-KTKQSIAKPSP 1187


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +1

Query: 625 KVPLDVSVRAHWLSVDGVQPTVPE--NPPPLSKEAQKLES--VDPISKLSKPSNKDSAGK 792
           KV +  ++    L++DG+   V    +   +     ++ES  V PISK S       AG+
Sbjct: 353 KVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGR 412

Query: 793 PICGKAARLKASES 834
              GK  RL   E+
Sbjct: 413 TRPGKCFRLYTEEA 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,703
Number of Sequences: 5004
Number of extensions: 69549
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)