Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F04
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           35   0.001
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.69 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.5  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 18/73 (24%), Positives = 40/73 (54%)
 Frame = +1

Query: 295 LTLDSMKVIAESVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDH 474
           +T  +++ +A   G+  +     +E    +   L+ +++DA+ +  H+KR+ ++  D+ +
Sbjct: 30  ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVY 89

Query: 475 ALKIKNNECQYGF 513
           ALKI+     YGF
Sbjct: 90  ALKIQGRTL-YGF 101


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 568 HFIEEKEIDLSEILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKL-ESVD 744
           HF +  E+ ++  +S P    P  +   ++  S++  QPT+ + PP      ++L E+V 
Sbjct: 695 HFKKALEL-MNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVR 753

Query: 745 PISKL 759
             S++
Sbjct: 754 TASQI 758


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 633 IGCICSCTLAKCGWGSTNST*KSTTAFKRSSE 728
           +GC+C C LA    G+  S+  S+ +  ++ E
Sbjct: 1   MGCLCECDLATPRTGTNCSSGSSSDSDGQTDE 32


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 798 YRFTCRIFIAWF 763
           ++ TC+I IAWF
Sbjct: 107 FKSTCKIDIAWF 118


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 555 SSRCEPKWQRIRLNKSILTLIVFYLQGMIYI 463
           ++RC  KW  I     I T++ F L   I I
Sbjct: 208 TARCSMKWTLIEHAFEISTMLFFVLPMTIII 238


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 321 SRECWYRHSWR 353
           S +C++R SWR
Sbjct: 84  SMDCYFRQSWR 94


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 208 DKSLFNAVVNVSKDLISIMGDSELAYGSSLT 300
           DK+ F   V     L+ + GD  + YG   T
Sbjct: 126 DKNSFLHDVTERNKLVRLSGDGSVTYGMRFT 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,022
Number of Sequences: 438
Number of extensions: 5231
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)