Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F03
         (980 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.1  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   4.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   4.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   9.3  

>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +3

Query: 552 LNEHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 686
           L ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 727 LXRKPVPEGRKADRYPVSGRVGTGERTRELPGGNAW 620
           L R P  E  + D Y V G V +   TRE   GN +
Sbjct: 190 LVRAPKFEAPEVDNYVVMGIVASNSGTRETVNGNKY 225


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 719 KASSRREKGGQV---SGKRQGRNRRAHEGASR 633
           K   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 444 RIRVITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQRWRNPT 605
           R+     E T  +  S   G+   PR  RF++G+   + +  N   +Q + N T
Sbjct: 511 RVTSRMSEHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,942
Number of Sequences: 5004
Number of extensions: 45147
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)