Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F03
         (980 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   3.2  
08_01_0891 + 8775537-8776127,8776403-8776513                           29   4.3  
06_03_0218 + 18219956-18220555                                         29   4.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.9  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 638 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 519
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>08_01_0891 + 8775537-8776127,8776403-8776513
          Length = 233

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 602 DRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGNWL 718
           D      G +PW+L R+LSC    A  +    +P+ N L
Sbjct: 164 DAAAAAAGWAPWRLIRSLSCKGIEAVAVAAAAAPYHNLL 202


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 716 ASSRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 615
           A +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 104 ARARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,302,009
Number of Sequences: 37544
Number of extensions: 376304
Number of successful extensions: 1236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)