Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F02
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   3.9  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   5.2  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   5.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   9.0  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 182 VIKRNIIVALALSGVAGFTFKQLIGNER 265
           V  R IIV  A   VA FTF+QL G  +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 263 RKRKYAEFYRTYDAEKE-FEEMRKK 334
           RK  Y ++Y T+D  KE F+E++K+
Sbjct: 375 RKLGYTDYYDTFDGFKETFDELKKQ 399


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 94  NFSKIIIRHGWRKCSIDSEQASDA 165
           N SK +I++GW + S++SE  SDA
Sbjct: 472 NKSKYLIKNGWFEDSLNSEIWSDA 495


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 650 CLLQLIMXTNXAIASXISXIKHFFH 576
           CL+ L   TN  I   +   KHFFH
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,139
Number of Sequences: 5004
Number of extensions: 30013
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)