Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F01
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   7.4  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 364 NPNVDEIKEKLIEHVIDKRDRNGQF 438
           NPNV EI EKL + +++  D    F
Sbjct: 373 NPNVYEILEKLYKDLLELSDETELF 397


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 364 NPNVDEIKEKLIEHVIDKRDRNGQFMFPRATTFTRLMLGQL--RLGCQRAFSV*KPL 528
           +P+V    EKLIE   D R R     FP     T  M   +  RLG   +    KPL
Sbjct: 725 SPSVLNAIEKLIEKSFDSRSRQNS-SFPGHGPTTAPMGSSILKRLGIDESVDYTKPL 780


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 712 LPGRLVWREYF 680
           L G+L+WRE+F
Sbjct: 299 LHGQLLWREFF 309


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,960
Number of Sequences: 336
Number of extensions: 3658
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)