Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F01
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   2.7  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   3.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   6.3  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   8.3  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 674 RIKIFSPDQPPWQYIIIPCAATEPKYYILVRVHHLXLSG 790
           R  +F  + PP  +I+I  +++    Y L  ++H+ +SG
Sbjct: 540 RAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVSG 578


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 440 MNCPFLSRLSITCSMSFSLISSTF 369
           +N PF  +L ITC  S+  + STF
Sbjct: 126 VNWPFRKKLKITCVYSYVALCSTF 149


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 434 CPFLSRLSITCSMSFSLISSTFGLPFTASSTLMITLI 324
           CP  + L   CS+  +LI+ TF     A++ ++ TL+
Sbjct: 466 CPPRASLETLCSLCVTLINDTFEPVRMATTNVLATLV 502


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 734 LHTVLLCIARAVGLERIF*YDVTDVF 657
           L  +L C+   V  ER+F ++VTDV+
Sbjct: 10  LGLLLTCVRFVVAKERLFEWNVTDVY 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,409
Number of Sequences: 5004
Number of extensions: 61018
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)