Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_F01
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 645 NAQIEYISDIVSKYSLQTNRPGN 713
           NA   ++SD+V+K   +  +PG+
Sbjct: 459 NADSNFVSDVVTKLRYEVFQPGD 481


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 645 NAQIEYISDIVSKYSLQTNRPGN 713
           NA   ++SD+V+K   +  +PG+
Sbjct: 427 NADSNFVSDVVTKLRYEVFQPGD 449


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 449 GLRHLLVSCWGNYAWDVNVRFRFENHFIVANAVYRGRPVTESNIQHTKPSIGRINSTE 622
           GL +  +SCW  +          +N  +VA      + V    I+   P  GR+N+T+
Sbjct: 319 GLANNTLSCWNEHQ-----SLDRQNIDVVARNEDTLQMVVSMKIKQNVPQSGRVNNTQ 371


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 712 LPGRLVWREYF 680
           L G+L+WRE+F
Sbjct: 303 LHGQLLWREFF 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,173
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)